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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11778-RA through 18771 annotations produced 1 hits



(CG11778):

Annotation Number : CG11778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033371
Gbrowse : chr2R:4969941-4971898 (+) // 100.0 //
Probeset : 1626260_at
Accessions : protein= NP_610447;, nucleotide= NM_136603;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005415 // nucleoside:sodium symporter activity // inferred from sequence or structural similarity /// 0005415 // nucleo
FlyMine data for FBgn0033371.
VDRC has 2 RNAi stocks for FBgn0033371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland2 ± 00 of 4 0.15Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart2 ± 00 of 4 0.17Down
Fat body2 ± 10 of 4 0.14Down
Ovary0 ± 00 of 4 0.00Down
Testis151 ± 134 of 411.20Up
Male accessory glands2 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.15Down
Mated spermatheca0 ± 00 of 4 0.04Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland1 ± 10 of 4 0.14Down
Larval midgut0 ± 00 of 4 0.06Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.09Down
Larval fat body18 ± 91 of 4 1.40None
Larval trachea0 ± 10 of 4 0.07Down
Larval carcass2 ± 10 of 4 0.17Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly13 ± 11 of 4

Looking for CG11778-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime