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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11802-RA through 18771 annotations produced 1 hits



(CG11802):

Annotation Number : CG11802
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030346
Gbrowse : chrX:11765331-11766811 (-) // 100.0 //
Probeset : 1625260_at
Accessions : protein= NP_572759;, nucleotide= NM_132531;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030346.
BioGrid reports that CG11802 interacts with CG3224 CG6251 CG7015 CG12799 CG8235 .
VDRC has 3 RNAi stocks for FBgn0030346 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain279 ± 64 of 4 2.00Up
Head125 ± 84 of 4 0.90None
Eye216 ± 124 of 4 1.52Up
Thoracicoabdominal ganglion244 ± 44 of 4 1.70Up
Salivary gland75 ± 44 of 4 0.53Down
Crop98 ± 44 of 4 0.70Down
Midgut69 ± 34 of 4 0.50Down
Tubule102 ± 14 of 4 0.70Down
Hindgut83 ± 54 of 4 0.60Down
Heart88 ± 44 of 4 0.62Down
Fat body57 ± 54 of 4 0.40Down
Ovary241 ± 74 of 4 1.70Up
Testis114 ± 64 of 4 0.80None
Male accessory glands81 ± 34 of 4 0.60Down
Virgin spermatheca45 ± 14 of 4 0.32Down
Mated spermatheca52 ± 44 of 4 0.37Down
Adult carcass56 ± 34 of 4 0.40Down
Larval CNS121 ± 154 of 4 0.85None
Larval Salivary gland70 ± 24 of 4 0.50Down
Larval midgut71 ± 34 of 4 0.50Down
Larval tubule70 ± 34 of 4 0.50Down
Larval hindgut65 ± 34 of 4 0.46Down
Larval fat body56 ± 44 of 4 0.40Down
Larval trachea79 ± 14 of 4 0.56Down
Larval carcass50 ± 44 of 4 0.36Down
S2 cells (growing)50 ± 04 of 4 0.36Down
Whole fly142 ± 94 of 4

Looking for CG11802-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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