FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11811-RA through 18771 annotations produced 1 hits

(CG11811):

Annotation Number : CG11811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036099
Gbrowse : chr3L:10684116-10685701 (+) // 100.0 //
Probeset : 1640421_at
Accessions : protein= NP_648408;, nucleotide= NM_140151;
Interpro : 0004385 // guanylate kinase activity // inferred from sequence or structural similarity /// 0004385 // guanylate kinase
FlyMine data for FBgn0036099.
BDGP gene expression has embryonic in situ data for CG11811: 12 pix of staining in 11 body parts.
Homophila reports that CG11811 is a close match (4e-18) to human gene CASK;MICPCH (NP_003679), a gene associated with Mental retardation and microcephaly with pontine and cerebellar hypoplasia, 300749 (3).
BioGrid reports that CG11811 interacts with CG15236 CG33522 .
TRiP has 1 RNAi stocks for FBgn0036099 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036099 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	152 ± 5	4 of 4	0.70	Down
Head	148 ± 13	4 of 4	0.70	Down
Eye	130 ± 4	4 of 4	0.61	Down
Thoracicoabdominal ganglion	141 ± 5	4 of 4	0.70	Down
Salivary gland	151 ± 9	4 of 4	0.71	Down
Crop	276 ± 7	4 of 4	1.30	Up
Midgut	117 ± 6	4 of 4	0.60	Down
Tubule	127 ± 6	4 of 4	0.60	Down
Hindgut	137 ± 4	4 of 4	0.60	Down
Heart	156 ± 4	4 of 4	0.74	Down
Fat body	251 ± 7	4 of 4	1.18	Up
Ovary	541 ± 10	4 of 4	2.50	Up
Testis	65 ± 4	4 of 4	0.30	Down
Male accessory glands	119 ± 7	4 of 4	0.60	Down
Virgin spermatheca	122 ± 6	4 of 4	0.58	Down
Mated spermatheca	148 ± 9	4 of 4	0.70	Down
Adult carcass	158 ± 8	4 of 4	0.70	Down
Larval CNS	397 ± 20	4 of 4	1.87	Up
Larval Salivary gland	441 ± 45	4 of 4	2.07	Up
Larval midgut	215 ± 7	4 of 4	1.01	None
Larval tubule	192 ± 4	4 of 4	0.90	Down
Larval hindgut	318 ± 12	4 of 4	1.50	Up
Larval fat body	384 ± 53	4 of 4	1.80	Up
Larval trachea	367 ± 42	4 of 4	1.73	Up
Larval carcass	509 ± 75	4 of 4	2.39	Up
S2 cells (growing)	241 ± 4	4 of 4	1.14	Up
Whole fly	212 ± 5	4 of 4

Looking for CG11811-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720