Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11815-RA through 18771 annotations produced 1 hits



(CG11815):

Annotation Number : CG11815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035299
Gbrowse : chr3L:1970278-1971130 (-) // 100.0 //
Probeset : 1629862_at
Accessions : protein= NP_647685;, nucleotide= NM_139428;
FlyMine data for FBgn0035299.
BioGrid reports that CG11815 interacts with CG8580 .
VDRC has 2 RNAi stocks for FBgn0035299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.20Down
Head3 00 of 4 0.20Down
Eye3 11 of 4 0.18Down
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland7 20 of 4 0.40Down
Crop4 10 of 4 0.20Down
Midgut6 00 of 4 0.30Down
Tubule5 01 of 4 0.30Down
Hindgut5 00 of 4 0.30Down
Heart3 00 of 4 0.17Down
Fat body6 21 of 4 0.33Down
Ovary3 01 of 4 0.20Down
Testis278 84 of 415.30Up
Male accessory glands8 10 of 4 0.50Down
Virgin spermatheca4 10 of 4 0.22Down
Mated spermatheca4 10 of 4 0.22Down
Adult carcass6 20 of 4 0.40Down
Larval CNS3 10 of 4 0.19Down
Larval Salivary gland8 21 of 4 0.45Down
Larval midgut5 10 of 4 0.31Down
Larval tubule4 00 of 4 0.30Down
Larval hindgut2 00 of 4 0.15Down
Larval fat body29 172 of 4 1.60None
Larval trachea6 22 of 4 0.35Down
Larval carcass4 11 of 4 0.25Down
S2 cells (growing)6 00 of 4 0.34Down
Whole fly18 04 of 4

Looking for CG11815-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime