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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11816-RA through 18771 annotations produced 1 hits



(CG11816):

Annotation Number : CG11816
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030495
Gbrowse : chrX:13447095-13448298 (-) // 100.0 //
Probeset : 1631036_at
Accessions : protein= NP_572897;, nucleotide= NM_132669;
FlyMine data for FBgn0030495.
VDRC has 1 RNAi stocks for FBgn0030495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.80None
Head1 ± 00 of 4 0.20None
Eye2 ± 10 of 4 0.43None
Thoracicoabdominal ganglion4 ± 10 of 4 0.80None
Salivary gland6 ± 30 of 4 1.07None
Crop3 ± 11 of 4 0.60None
Midgut6 ± 20 of 4 1.10None
Tubule4 ± 00 of 4 0.70Down
Hindgut4 ± 20 of 4 0.80None
Heart4 ± 10 of 4 0.76None
Fat body9 ± 21 of 4 1.61None
Ovary1 ± 10 of 4 0.30None
Testis24 ± 14 of 4 4.20Up
Male accessory glands5 ± 20 of 4 1.00None
Virgin spermatheca1 ± 00 of 4 0.27None
Mated spermatheca6 ± 30 of 4 1.17None
Adult carcass5 ± 20 of 4 0.90None
Larval CNS3 ± 00 of 4 0.67None
Larval Salivary gland6 ± 20 of 4 1.06None
Larval midgut6 ± 20 of 4 1.14None
Larval tubule5 ± 00 of 4 0.90None
Larval hindgut7 ± 00 of 4 1.22None
Larval fat body7 ± 10 of 4 1.20None
Larval trachea5 ± 10 of 4 0.97None
Larval carcass2 ± 00 of 4 0.37None
S2 cells (growing)1 ± 00 of 4 0.29None
Whole fly5 ± 20 of 4

Looking for CG11816-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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