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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11821-RA through 18771 annotations produced 1 hits



Cyp12a5 (Cyp12a5):

Annotation Number : CG11821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038680
Gbrowse : chr3R:14958173-14960429 (+) // 100.0 //
Probeset : 1629771_at
Accessions : protein= NP_650782;, nucleotide= NM_142525;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0038680.
BDGP gene expression has embryonic in situ data for Cyp12a5: 4 pix of staining in 1 body parts.
Homophila reports that CG11821 is a close match (2e-11) to human gene CYP17;CYP17A1;P450C17 (NP_000093), a gene associated with 17,20-lyase deficiency, isolated, 202110 (3);17-alpha-hydroxylase/17,20-lyase deficiency, 202110 (3).
BioGrid reports that CG11821 interacts with CG18617 .
VDRC has 4 RNAi stocks for FBgn0038680 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 44 of 4 0.60Down
Head131 134 of 4 1.80Up
Eye51 44 of 4 0.71None
Thoracicoabdominal ganglion76 34 of 4 1.00None
Salivary gland135 104 of 4 1.86Up
Crop104 34 of 4 1.40Up
Midgut480 204 of 4 6.60Up
Tubule327 394 of 4 4.50Up
Hindgut311 104 of 4 4.30Up
Heart245 144 of 4 3.37Up
Fat body136 104 of 4 1.88Up
Ovary4 00 of 4 0.10Down
Testis24 04 of 4 0.30Down
Male accessory glands29 53 of 4 0.40Down
Virgin spermatheca158 64 of 4 2.17Up
Mated spermatheca120 54 of 4 1.66Up
Adult carcass142 104 of 4 2.00Up
Larval CNS20 44 of 4 0.28Down
Larval Salivary gland23 42 of 4 0.33Down
Larval midgut234 244 of 4 3.23Up
Larval tubule76 74 of 4 1.00None
Larval hindgut347 194 of 4 4.78Up
Larval fat body1 00 of 4 0.00Down
Larval trachea14 64 of 4 0.20Down
Larval carcass141 114 of 4 1.94Up
S2 cells (growing)225 74 of 4 3.10Up
Whole fly72 74 of 4

Looking for CG11821-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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