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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11828-RA through 18771 annotations produced 1 hits


March 2006 (FlyBase/BDGP 5.3) (chr3R:24748841-24750705 (+) // 100.0 //):

Annotation Number : CG11828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1633604_at
Accessions : protein= EC:1.13.11.- /// EC:1.14.11.2, nucleotide=
Interpro : 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from sequence or structural similarity ///


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye3 ± 10 of 4 0.12Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland5 ± 40 of 4 0.22Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.07Down
Fat body1 ± 00 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis6 ± 21 of 4 0.30Down
Male accessory glands2802 ± 634 of 4109.50Up
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca0 ± 00 of 4 0.03Down
Adult carcass4 ± 20 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut3 ± 10 of 4 0.12Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.10Down
Larval carcass0 ± 00 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly25 ± 34 of 4

Looking for CG11828-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime