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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11837-RA through 18771 annotations produced 1 hits



chr3R:24875232-24876443 (+) // 100.0 // ():

Annotation Number : CG11837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1631093_at
Accessions : protein= , nucleotide= NP_651660;
Pathway : 0000154 // rRNA modification // inferred from sequence or structural similarity /// 0000154 // rRNA modification // infe
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 24 of 4 0.40Down
Head50 44 of 4 0.50Down
Eye26 14 of 4 0.29Down
Thoracicoabdominal ganglion32 24 of 4 0.30Down
Salivary gland45 04 of 4 0.49Down
Crop45 24 of 4 0.50Down
Midgut39 24 of 4 0.40Down
Tubule41 54 of 4 0.50Down
Hindgut29 14 of 4 0.30Down
Heart27 14 of 4 0.30Down
Fat body68 74 of 4 0.73Down
Ovary238 14 of 4 2.60Up
Testis17 04 of 4 0.20Down
Male accessory glands65 84 of 4 0.70Down
Virgin spermatheca51 44 of 4 0.56Down
Mated spermatheca73 44 of 4 0.79Down
Adult carcass48 54 of 4 0.50Down
Larval CNS109 64 of 4 1.18Up
Larval Salivary gland65 64 of 4 0.70Down
Larval midgut26 44 of 4 0.29Down
Larval tubule15 13 of 4 0.20Down
Larval hindgut42 44 of 4 0.45Down
Larval fat body20 33 of 4 0.20Down
Larval trachea90 164 of 4 0.97None
Larval carcass61 174 of 4 0.66None
S2 cells (growing)101 54 of 4 1.09None
Whole fly93 44 of 4

Looking for CG11837-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime