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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11844-RB through 18771 annotations produced 1 hits



vig2 (vig2):

Annotation Number : CG11844
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046214
Gbrowse : chrYHet:305268-307006 (+) // 66.52 // /// chr3R:20949094-20951348 (+) // 100.0 //
Probeset : 1641193_s_at
Accessions : protein= NP_001097913; /// NP_733083; /// NP_733084; /// NP_733085;, nucleotide= NM_001104443; /// NM_170204; /// NM_170205; /// NM_170206;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005700 // polytene chromosome // inferred from direct assay /// 00
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0046214.
BioGrid reports that CG11844 interacts with CG33214 CG17870 CG9610 .
VDRC has 1 RNAi stocks for FBgn0046214 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain600 ± 154 of 4 0.30Down
Head707 ± 184 of 4 0.40Down
Eye632 ± 114 of 4 0.34Down
Thoracicoabdominal ganglion841 ± 134 of 4 0.40Down
Salivary gland1065 ± 364 of 4 0.57Down
Crop955 ± 64 of 4 0.50Down
Midgut924 ± 224 of 4 0.50Down
Tubule829 ± 854 of 4 0.40Down
Hindgut932 ± 74 of 4 0.50Down
Heart780 ± 164 of 4 0.42Down
Fat body939 ± 984 of 4 0.50Down
Ovary2402 ± 134 of 4 1.30Up
Testis728 ± 214 of 4 0.40Down
Male accessory glands2164 ± 734 of 4 1.20Up
Virgin spermatheca1401 ± 564 of 4 0.75Down
Mated spermatheca1487 ± 484 of 4 0.80Down
Adult carcass647 ± 554 of 4 0.30Down
Larval CNS1697 ± 374 of 4 0.91Down
Larval Salivary gland1446 ± 704 of 4 0.77Down
Larval midgut689 ± 374 of 4 0.37Down
Larval tubule749 ± 214 of 4 0.40Down
Larval hindgut1250 ± 824 of 4 0.67Down
Larval fat body864 ± 414 of 4 0.50Down
Larval trachea1765 ± 2274 of 4 0.94None
Larval carcass1212 ± 1094 of 4 0.65Down
S2 cells (growing)1706 ± 324 of 4 0.91Down
Whole fly1869 ± 304 of 4

Looking for CG11844-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime