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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11848-RA through 18771 annotations produced 1 hits



CG11848 (Bili):

Annotation Number : CG11848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039282
Gbrowse : chr3R:20957065-20962431 (+) // 100.0 //
Probeset : 1640291_at
Accessions : protein= NP_001163722; /// NP_001163723; /// NP_001163724; /// NP_001163725; /// NP_001163726; /// NP_651342;, nucleotide= NM_001170251; /// NM_001170252; /// NM_001170253; /// NM_001170254; /// NM_001170255; /// NM_143085;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0039282.
Homophila reports that CG11848 is a close match (5e-23) to human gene CAM;CCM1;KRIT1 (NP_919438), a gene associated with Cavernous malformations of CNS and retina, 116860 (3);Cerebral cavernous malformations-1, 116860 (3);Hyperkeratotic cutaneous capillary-venous malformations associated with cerebral capillary malformations, 116860 (3).
TRiP has 1 RNAi stocks for FBgn0039282 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 104 of 432.60Up
Head53 54 of 4 8.20Up
Eye25 14 of 4 3.98Up
Thoracicoabdominal ganglion127 44 of 419.80Up
Salivary gland3 10 of 4 0.50None
Crop1 00 of 4 0.30Down
Midgut2 10 of 4 0.50Down
Tubule1 00 of 4 0.30Down
Hindgut1 00 of 4 0.20Down
Heart1 00 of 4 0.18Down
Fat body3 21 of 4 0.46None
Ovary1 00 of 4 0.20Down
Testis1 00 of 4 0.20Down
Male accessory glands3 20 of 4 0.50None
Virgin spermatheca0 00 of 4 0.13Down
Mated spermatheca0 00 of 4 0.03Down
Adult carcass1 10 of 4 0.30Down
Larval CNS198 554 of 430.84Up
Larval Salivary gland1 10 of 4 0.30Down
Larval midgut1 00 of 4 0.22Down
Larval tubule2 00 of 4 0.40Down
Larval hindgut1 00 of 4 0.21Down
Larval fat body3 10 of 4 0.60None
Larval trachea4 12 of 4 0.64None
Larval carcass1 00 of 4 0.23Down
S2 cells (growing)1 00 of 4 0.22Down
Whole fly6 03 of 4

Looking for CG11848-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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