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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11854-RA through 18771 annotations produced 1 hits



(CG11854):

Annotation Number : CG11854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039299
Gbrowse : chr3R:21067779-21068984 (+) // 100.0 // /// chrUextra:27219667-27220192 (+) // 52.15 //
Probeset : 1630761_at
Accessions : protein= NP_651358;, nucleotide= NM_143101;
FlyMine data for FBgn0039299.
BioGrid reports that CG11854 interacts with CG13811 .
VDRC has 4 RNAi stocks for FBgn0039299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30None
Head14 24 of 4 1.90None
Eye15 34 of 4 2.05None
Thoracicoabdominal ganglion3 10 of 4 0.50None
Salivary gland2 10 of 4 0.38None
Crop19 24 of 4 2.60Up
Midgut31 24 of 4 4.30Up
Tubule3 00 of 4 0.40Down
Hindgut79 44 of 410.80Up
Heart2 10 of 4 0.38None
Fat body2 10 of 4 0.38None
Ovary0 00 of 4 0.10Down
Testis4 01 of 4 0.60None
Male accessory glands3 10 of 4 0.40None
Virgin spermatheca3 10 of 4 0.40None
Mated spermatheca4 10 of 4 0.58None
Adult carcass10 31 of 4 1.40None
Larval CNS1 01 of 4 0.18Down
Larval Salivary gland6 21 of 4 0.85None
Larval midgut8 10 of 4 1.09None
Larval tubule3 11 of 4 0.50None
Larval hindgut475 634 of 464.41Up
Larval fat body8 31 of 4 1.10None
Larval trachea1212 6594 of 4164.44Up
Larval carcass3889 5984 of 4527.36Up
S2 cells (growing)0 00 of 4 0.12Down
Whole fly7 12 of 4

Looking for CG11854-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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