Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11865-RA through 18771 annotations produced 1 hits



(CG11865):

Annotation Number : CG11865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028947
Gbrowse : chr2L:15617001-15617794 (+) // 100.0 //
Probeset : 1636201_at
Accessions : protein= NP_609759;, nucleotide= NM_135915;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0028947.
BioGrid reports that CG11865 interacts with CG8759 .
VDRC has 2 RNAi stocks for FBgn0028947 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.30None
Head1 ± 10 of 4 1.90None
Eye0 ± 00 of 4 0.86None
Thoracicoabdominal ganglion3 ± 10 of 4 3.50None
Salivary gland5 ± 20 of 4 5.76None
Crop1 ± 00 of 4 1.70None
Midgut3 ± 11 of 4 3.40None
Tubule1 ± 00 of 4 1.50None
Hindgut1 ± 00 of 4 1.20None
Heart2 ± 10 of 4 2.97None
Fat body1 ± 00 of 4 1.30None
Ovary1 ± 00 of 4 1.70None
Testis2 ± 00 of 4 3.10None
Male accessory glands2 ± 00 of 4 2.50None
Virgin spermatheca1 ± 00 of 4 1.57None
Mated spermatheca0 ± 00 of 4 0.76None
Adult carcass2 ± 10 of 4 3.10None
Larval CNS1 ± 00 of 4 1.73None
Larval Salivary gland2 ± 00 of 4 2.16None
Larval midgut0 ± 00 of 4 0.86None
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut0 ± 00 of 4 0.51None
Larval fat body1 ± 00 of 4 1.20None
Larval trachea2 ± 20 of 4 2.32None
Larval carcass2 ± 00 of 4 2.16None
S2 cells (growing)0 ± 00 of 4 0.68None
Whole fly0 ± 00 of 4

Looking for CG11865-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime