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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11874-RA through 18771 annotations produced 1 hits



chr3R:24934774-24938526 (-) // 99.87 // ():

Annotation Number : CG11874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626972_at
Accessions : protein= , nucleotide= NP_651667;
Pathway : 0008152 // metabolic process // inferred from electronic annotation
Interpro : 0016020 // membrane // inferred from electronic annotation
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain588 104 of 4 3.00Up
Head226 74 of 4 1.20None
Eye307 94 of 4 1.57Up
Thoracicoabdominal ganglion582 84 of 4 3.00Up
Salivary gland139 64 of 4 0.71Down
Crop132 44 of 4 0.70Down
Midgut53 24 of 4 0.30Down
Tubule105 94 of 4 0.50Down
Hindgut114 24 of 4 0.60Down
Heart132 144 of 4 0.68Down
Fat body140 124 of 4 0.71Down
Ovary519 164 of 4 2.60Up
Testis81 34 of 4 0.40Down
Male accessory glands206 84 of 4 1.10None
Virgin spermatheca87 44 of 4 0.44Down
Mated spermatheca87 54 of 4 0.45Down
Adult carcass105 124 of 4 0.50Down
Larval CNS378 84 of 4 1.93Up
Larval Salivary gland449 194 of 4 2.29Up
Larval midgut56 40 of 4 0.29Down
Larval tubule166 44 of 4 0.80None
Larval hindgut149 14 of 4 0.76Down
Larval fat body146 114 of 4 0.70Down
Larval trachea174 124 of 4 0.89None
Larval carcass208 44 of 4 1.06None
S2 cells (growing)317 74 of 4 1.62Up
Whole fly196 144 of 4

Looking for CG11874-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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