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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11878-RA through 18771 annotations produced 1 hits



(CG11878):

Annotation Number : CG11878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039310
Gbrowse : chr3R:21099569-21100888 (+) // 100.0 //
Probeset : 1634591_at
Accessions : protein= NP_651369;, nucleotide= NM_143112;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039310.
BioGrid reports that CG11878 interacts with CG14184 CG2960 CG32694 .
VDRC has 5 RNAi stocks for FBgn0039310 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye2 10 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland23 61 of 4 0.12Down
Crop1 00 of 4 0.00Down
Midgut1833 394 of 4 9.70Up
Tubule3556 3434 of 418.90Up
Hindgut3495 1264 of 418.60Up
Heart2 10 of 4 0.01Down
Fat body5 20 of 4 0.03Down
Ovary0 00 of 4 0.00Down
Testis3 10 of 4 0.00Down
Male accessory glands7 30 of 4 0.00Down
Virgin spermatheca9 20 of 4 0.05Down
Mated spermatheca5 20 of 4 0.03Down
Adult carcass10 20 of 4 0.10Down
Larval CNS2 20 of 4 0.01Down
Larval Salivary gland5 10 of 4 0.03Down
Larval midgut6 20 of 4 0.03Down
Larval tubule212 334 of 4 1.10None
Larval hindgut76 184 of 4 0.40Down
Larval fat body6 10 of 4 0.00Down
Larval trachea0 00 of 4 0.00Down
Larval carcass3 00 of 4 0.02Down
S2 cells (growing)6 10 of 4 0.03Down
Whole fly188 304 of 4

Looking for CG11878-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime