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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11886-RA through 18771 annotations produced 1 hits



Stem-loop binding protein (Slbp):

Annotation Number : CG11886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041186
Gbrowse : chr3R:24977792-24978969 (-) // 100.0 //
Probeset : 1629406_at
Accessions : protein= NP_477480;, nucleotide= NM_058132;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /
FlyMine data for FBgn0041186.
BDGP gene expression has embryonic in situ data for Slbp: 22 pix of staining in 15 body parts.
VDRC has 4 RNAi stocks for FBgn0041186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 34 of 4 0.40Down
Head79 64 of 4 0.20Down
Eye77 24 of 4 0.24Down
Thoracicoabdominal ganglion107 44 of 4 0.30Down
Salivary gland94 104 of 4 0.29Down
Crop105 14 of 4 0.30Down
Midgut51 44 of 4 0.20Down
Tubule30 44 of 4 0.10Down
Hindgut57 54 of 4 0.20Down
Heart66 54 of 4 0.21Down
Fat body82 154 of 4 0.26Down
Ovary655 64 of 4 2.00Up
Testis215 94 of 4 0.70Down
Male accessory glands71 94 of 4 0.20Down
Virgin spermatheca37 54 of 4 0.11Down
Mated spermatheca43 74 of 4 0.14Down
Adult carcass84 44 of 4 0.30Down
Larval CNS304 44 of 4 0.94None
Larval Salivary gland149 94 of 4 0.46Down
Larval midgut42 44 of 4 0.13Down
Larval tubule39 24 of 4 0.10Down
Larval hindgut65 14 of 4 0.20Down
Larval fat body57 74 of 4 0.20Down
Larval trachea147 124 of 4 0.46Down
Larval carcass94 24 of 4 0.29Down
S2 cells (growing)310 124 of 4 0.96None
Whole fly322 284 of 4

Looking for CG11886-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime