FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11895-RA through 18771 annotations produced 1 hits

flamingo (stan):

Annotation Number : CG11895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024836
Gbrowse : chr2R:6593410-6608646 (+) // 100.0 //
Probeset : 1626087_at
Accessions : protein= NP_001163113; /// NP_724962;, nucleotide= NM_001169642; /// NM_165794;
Pathway : open tracheal system // inferred from mutant phenotype /// 0042067 // establishment of ommatidial planar polarity // in
Interpro : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
FlyMine data for FBgn0024836.
BDGP gene expression has embryonic in situ data for stan: 14 pix of staining in 7 body parts.
Homophila reports that CG11895 is a close match (4e-11) to human gene LAMA3;LOCS (NP_937762), a gene associated with Epidermolysis bullosa, generalized atrophic benign, 226650 (3);Epidermolysis bullosa, junctional, Herlitz type, 226700 (3);Laryngoonychocutaneous syndrome, 245660 (3).
BioGrid reports that CG11895 interacts with CG3619 CG13396 CG17697 CG17697 CG17697 CG17697 CG16993 CG16993 CG8075 CG8075 .
TRiP has 2 RNAi stocks for FBgn0024836 available for purchase.
VDRC has 4 RNAi stocks for FBgn0024836 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	291 ± 7	4 of 4	14.40	Up
Head	76 ± 7	4 of 4	3.80	Up
Eye	55 ± 8	4 of 4	2.73	Up
Thoracicoabdominal ganglion	167 ± 5	4 of 4	8.30	Up
Salivary gland	31 ± 5	1 of 4	1.57	None
Crop	36 ± 4	4 of 4	1.80	Up
Midgut	22 ± 3	1 of 4	1.10	None
Tubule	25 ± 1	3 of 4	1.20	Up
Hindgut	25 ± 1	4 of 4	1.20	None
Heart	38 ± 4	4 of 4	1.89	Up
Fat body	38 ± 7	4 of 4	1.90	Up
Ovary	8 ± 1	3 of 4	0.40	Down
Testis	12 ± 0	2 of 4	0.60	Down
Male accessory glands	43 ± 6	4 of 4	2.10	Up
Virgin spermatheca	34 ± 0	4 of 4	1.68	Up
Mated spermatheca	29 ± 4	3 of 4	1.46	None
Adult carcass	24 ± 1	1 of 4	1.20	None
Larval CNS	572 ± 70	4 of 4	28.18	Up
Larval Salivary gland	30 ± 3	4 of 4	1.52	Up
Larval midgut	37 ± 5	3 of 4	1.85	Up
Larval tubule	32 ± 4	4 of 4	1.60	Up
Larval hindgut	46 ± 11	4 of 4	2.29	None
Larval fat body	12 ± 3	2 of 4	0.60	None
Larval trachea	71 ± 26	4 of 4	3.51	Up
Larval carcass	69 ± 2	4 of 4	3.45	Up
S2 cells (growing)	3 ± 1	0 of 4	0.19	Down
Whole fly	20 ± 2	4 of 4

Looking for CG11895-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720