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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11900-RA through 18771 annotations produced 1 hits



(CG11900):

Annotation Number : CG11900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039650
Gbrowse : chr3R:25027513-25028181 (-) // 100.0 //
Probeset : 1633159_at
Accessions : protein= NP_651682;, nucleotide= NM_143425;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0039650.
VDRC has 3 RNAi stocks for FBgn0039650 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 34 of 4 0.80Down
Head37 ± 54 of 4 0.60Down
Eye76 ± 14 of 4 1.24Up
Thoracicoabdominal ganglion58 ± 34 of 4 0.90None
Salivary gland73 ± 134 of 4 1.18None
Crop65 ± 34 of 4 1.10None
Midgut75 ± 44 of 4 1.20Up
Tubule48 ± 14 of 4 0.80Down
Hindgut69 ± 24 of 4 1.10None
Heart65 ± 34 of 4 1.06None
Fat body43 ± 84 of 4 0.70Down
Ovary91 ± 44 of 4 1.50Up
Testis23 ± 24 of 4 0.40Down
Male accessory glands61 ± 24 of 4 1.00None
Virgin spermatheca39 ± 34 of 4 0.64Down
Mated spermatheca37 ± 34 of 4 0.61Down
Adult carcass51 ± 64 of 4 0.80None
Larval CNS80 ± 94 of 4 1.30Up
Larval Salivary gland61 ± 24 of 4 1.00None
Larval midgut65 ± 94 of 4 1.05None
Larval tubule105 ± 84 of 4 1.70Up
Larval hindgut55 ± 34 of 4 0.90None
Larval fat body49 ± 84 of 4 0.80None
Larval trachea100 ± 24 of 4 1.62Up
Larval carcass55 ± 64 of 4 0.90None
S2 cells (growing)51 ± 14 of 4 0.84Down
Whole fly62 ± 24 of 4

Looking for CG11900-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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