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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11908-RA through 18771 annotations produced 1 hits


rha (rha):

Annotation Number : CG11908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027376
Gbrowse : chr3R:21165973-21170562 (+) // 99.91 //
Probeset : 1625115_at
Accessions : protein= NP_651390;, nucleotide= NM_143133;
Pathway : 0005694 // chromosome // non-traceable author statement
FlyMine data for FBgn0027376.
BDGP gene expression has embryonic in situ data for rha: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0027376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.22Down
Crop4 ± 10 of 4 0.10Down
Midgut5 ± 20 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.05Down
Fat body3 ± 10 of 4 0.08Down
Ovary3 ± 10 of 4 0.10Down
Testis617 ± 134 of 415.40Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.10Down
Mated spermatheca4 ± 10 of 4 0.11Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS2 ± 11 of 4 0.06Down
Larval Salivary gland0 ± 00 of 4 0.02Down
Larval midgut3 ± 00 of 4 0.07Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.09Down
Larval fat body93 ± 453 of 4 2.30None
Larval trachea6 ± 41 of 4 0.16Down
Larval carcass5 ± 00 of 4 0.13Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly40 ± 44 of 4

Looking for CG11908-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime