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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11910-RA through 18771 annotations produced 1 hits


astrocytic leucine-rich repeat molecule (CG11910):

Annotation Number : CG11910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039332
Gbrowse : chr3R:21206784-21208522 (-) // 100.0 //
Probeset : 1629996_at
Accessions : protein= NP_651393;, nucleotide= NM_143136;
Pathway : 0016942 // insulin-like growth factor binding protein complex // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred
FlyMine data for FBgn0039332.
BDGP gene expression has embryonic in situ data for CG11910: 11 pix of staining in 3 body parts.
Homophila reports that CG11910 is a close match (4e-12) to human gene GREAT;LGR8 (NP_570718), a gene associated with Cryptorchidism, bilateral, 219050 (3).
TRiP has 1 RNAi stocks for FBgn0039332 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039332 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1368 ± 434 of 458.00Up
Head520 ± 74 of 422.00Up
Eye91 ± 104 of 4 3.90Up
Thoracicoabdominal ganglion2268 ± 774 of 496.10Up
Salivary gland3 ± 10 of 4 0.14Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 11 of 4 0.11Down
Fat body1 ± 10 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 11 of 4 0.13Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass9 ± 21 of 4 0.40Down
Larval CNS1097 ± 524 of 446.50Up
Larval Salivary gland1 ± 00 of 4 0.06Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 10 of 4 0.08Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea3 ± 32 of 4 0.16Down
Larval carcass2 ± 00 of 4 0.10Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly23 ± 14 of 4

Looking for CG11910-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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