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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11912-RA through 18771 annotations produced 1 hits


/// (CG11912 /// DsimCG11912):

Annotation Number : CG11912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031248
Gbrowse : chr2L:318356-319254 (-) // 100.0 //
Probeset : 1639338_at
Accessions : protein= NP_608517;, nucleotide= NM_134673;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031248.
BDGP gene expression has embryonic in situ data for CG11912: 8 pix of staining in 1 body parts.
Homophila reports that CG11912 is a close match (8e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115780), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 2 RNAi stocks for FBgn0031248 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head4 ± 20 of 4 0.00Down
Eye5 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.00Down
Salivary gland12 ± 41 of 4 0.07Down
Crop6 ± 20 of 4 0.00Down
Midgut1904 ± 1104 of 411.10Up
Tubule7 ± 11 of 4 0.00Down
Hindgut7 ± 00 of 4 0.00Down
Heart3 ± 11 of 4 0.02Down
Fat body10 ± 61 of 4 0.06Down
Ovary5 ± 11 of 4 0.00Down
Testis27 ± 14 of 4 0.20Down
Male accessory glands13 ± 30 of 4 0.10Down
Virgin spermatheca10 ± 00 of 4 0.06Down
Mated spermatheca9 ± 10 of 4 0.05Down
Adult carcass11 ± 30 of 4 0.10Down
Larval CNS9 ± 33 of 4 0.06Down
Larval Salivary gland5 ± 10 of 4 0.03Down
Larval midgut4999 ± 4534 of 429.26Up
Larval tubule13 ± 21 of 4 0.10Down
Larval hindgut11 ± 11 of 4 0.07Down
Larval fat body15 ± 32 of 4 0.10Down
Larval trachea5 ± 31 of 4 0.03Down
Larval carcass7 ± 00 of 4 0.04Down
S2 cells (growing)7 ± 00 of 4 0.04Down
Whole fly170 ± 174 of 4

Looking for CG11912-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime