Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11949-RC through 18771 annotations produced 1 hits



Coracle (cora):

Annotation Number : CG11949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010434
Gbrowse : chr2R:15116569-15131256 (+) // 100.0 //
Probeset : 1627454_a_at
Accessions : protein= NP_523791; /// NP_725864; /// NP_725865; /// NP_725866;, nucleotide= NM_079067; /// NM_166336; /// NM_166337; /// NM_166338;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035321 // maintenance of imaginal disc-derived wing hair or
Interpro : 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from
FlyMine data for FBgn0010434.
BDGP gene expression has embryonic in situ data for cora: 14 pix of staining in 16 body parts.
Homophila reports that CG11949 is a close match (5e-11) to human gene NF2 (NP_861971), a gene associated with Meningioma, NF2-related, somatic, 607174 (3);Neurofibromatosis, type 2, 101000 (3);Schwannomatosis, 162091 (3).
BioGrid reports that CG11949 interacts with CG9636 CG10079 CG10079 .
TRiP has 2 RNAi stocks for FBgn0010434 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010434 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain583 44 of 4 4.10Up
Head348 144 of 4 2.50Up
Eye207 74 of 4 1.46Up
Thoracicoabdominal ganglion565 194 of 4 4.00Up
Salivary gland215 94 of 4 1.52Up
Crop534 374 of 4 3.80Up
Midgut211 84 of 4 1.50Up
Tubule54 24 of 4 0.40Down
Hindgut300 34 of 4 2.10Up
Heart265 174 of 4 1.88Up
Fat body79 124 of 4 0.56Down
Ovary54 14 of 4 0.40Down
Testis51 44 of 4 0.40Down
Male accessory glands237 94 of 4 1.70Up
Virgin spermatheca65 44 of 4 0.46Down
Mated spermatheca106 184 of 4 0.75None
Adult carcass339 354 of 4 2.40Up
Larval CNS583 374 of 4 4.12Up
Larval Salivary gland347 334 of 4 2.45Up
Larval midgut317 94 of 4 2.24Up
Larval tubule79 44 of 4 0.60Down
Larval hindgut487 174 of 4 3.44Up
Larval fat body86 34 of 4 0.60Down
Larval trachea546 274 of 4 3.86Up
Larval carcass391 164 of 4 2.76Up
S2 cells (growing)800 114 of 4 5.65Up
Whole fly141 144 of 4

Looking for CG11949-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime