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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11967-RA through 18771 annotations produced 1 hits



(CG11967):

Annotation Number : CG11967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037646
Gbrowse : chr3R:4806642-4808553 (+) // 100.0 //
Probeset : 1633770_at
Accessions : protein= NP_649849;, nucleotide= NM_141592;
Interpro : 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // infe
FlyMine data for FBgn0037646.
BDGP gene expression has embryonic in situ data for CG11967: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0037646 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 24 of 4 0.30Down
Head170 144 of 4 1.40Up
Eye71 64 of 4 0.59Down
Thoracicoabdominal ganglion46 44 of 4 0.40Down
Salivary gland84 64 of 4 0.70Down
Crop209 84 of 4 1.70Up
Midgut65 34 of 4 0.50Down
Tubule152 324 of 4 1.30None
Hindgut96 74 of 4 0.80Down
Heart245 114 of 4 2.04Up
Fat body383 274 of 4 3.19Up
Ovary189 64 of 4 1.60Up
Testis3 01 of 4 0.00Down
Male accessory glands28 14 of 4 0.20Down
Virgin spermatheca540 224 of 4 4.49Up
Mated spermatheca425 314 of 4 3.54Up
Adult carcass210 94 of 4 1.80Up
Larval CNS36 34 of 4 0.30Down
Larval Salivary gland15 34 of 4 0.13Down
Larval midgut76 54 of 4 0.64Down
Larval tubule46 54 of 4 0.40Down
Larval hindgut115 14 of 4 0.96None
Larval fat body130 84 of 4 1.10None
Larval trachea64 144 of 4 0.54Down
Larval carcass43 34 of 4 0.36Down
S2 cells (growing)108 64 of 4 0.90None
Whole fly120 54 of 4

Looking for CG11967-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime