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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11982-RA through 18771 annotations produced 1 hits



(CG11982):

Annotation Number : CG11982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037653
Gbrowse : chr3R:4832173-4833761 (+) // 100.0 //
Probeset : 1635513_at
Accessions : protein= NP_649859;, nucleotide= NM_141602;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037653.
BDGP gene expression has embryonic in situ data for CG11982: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037653 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain302 94 of 4 1.20Up
Head217 114 of 4 0.90None
Eye450 154 of 4 1.77Up
Thoracicoabdominal ganglion246 24 of 4 1.00None
Salivary gland192 104 of 4 0.76Down
Crop193 64 of 4 0.80Down
Midgut148 64 of 4 0.60Down
Tubule202 54 of 4 0.80Down
Hindgut200 64 of 4 0.80Down
Heart166 24 of 4 0.65Down
Fat body136 114 of 4 0.54Down
Ovary290 74 of 4 1.10None
Testis1072 244 of 4 4.20Up
Male accessory glands258 114 of 4 1.00None
Virgin spermatheca114 54 of 4 0.45Down
Mated spermatheca108 24 of 4 0.42Down
Adult carcass177 84 of 4 0.70Down
Larval CNS240 94 of 4 0.95None
Larval Salivary gland170 44 of 4 0.67Down
Larval midgut132 94 of 4 0.52Down
Larval tubule190 34 of 4 0.70Down
Larval hindgut151 44 of 4 0.60Down
Larval fat body137 174 of 4 0.50Down
Larval trachea216 124 of 4 0.85Down
Larval carcass180 34 of 4 0.71Down
S2 cells (growing)229 54 of 4 0.90None
Whole fly254 124 of 4

Looking for CG11982-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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