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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11984-RA through 18771 annotations produced 1 hits



(CG11984):

Annotation Number : CG11984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037655
Gbrowse : chr3R:4836003-4840549 (-) // 100.0 //
Probeset : 1637220_s_at
Accessions : protein= NP_001163560; /// NP_001163561; /// NP_001163562; /// NP_649861; /// NP_731305; /// NP_731306;, nucleotide= NM_001170089; /// NM_001170090; /// NM_001170091; /// NM_141604; /// NM_169252; /// NM_169253;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0015459 // potassium channel regulator activity /
FlyMine data for FBgn0037655.
BDGP gene expression has embryonic in situ data for CG11984: 4 pix of staining in 1 body parts.
BioGrid reports that CG11984 interacts with CG16894 CG13458 CG1474 CG3923 CG5216 CG5717 CG8120 Dmel CG34365 .
TRiP has 1 RNAi stocks for FBgn0037655 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain495 ± 124 of 4 1.10None
Head356 ± 134 of 4 0.80Down
Eye392 ± 64 of 4 0.85Down
Thoracicoabdominal ganglion414 ± 174 of 4 0.90None
Salivary gland405 ± 154 of 4 0.87None
Crop536 ± 144 of 4 1.20Up
Midgut222 ± 94 of 4 0.50Down
Tubule273 ± 104 of 4 0.60Down
Hindgut496 ± 54 of 4 1.10None
Heart396 ± 84 of 4 0.85Down
Fat body227 ± 254 of 4 0.49Down
Ovary585 ± 94 of 4 1.30Up
Testis366 ± 124 of 4 0.80Down
Male accessory glands296 ± 74 of 4 0.60Down
Virgin spermatheca186 ± 104 of 4 0.40Down
Mated spermatheca175 ± 144 of 4 0.38Down
Adult carcass802 ± 134 of 4 1.70Up
Larval CNS314 ± 224 of 4 0.68Down
Larval Salivary gland282 ± 64 of 4 0.61Down
Larval midgut251 ± 184 of 4 0.54Down
Larval tubule414 ± 124 of 4 0.90None
Larval hindgut262 ± 134 of 4 0.57Down
Larval fat body273 ± 174 of 4 0.60Down
Larval trachea190 ± 154 of 4 0.41Down
Larval carcass309 ± 294 of 4 0.67Down
S2 cells (growing)300 ± 34 of 4 0.65Down
Whole fly464 ± 204 of 4

Looking for CG11984-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime