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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11988-RC through 18771 annotations produced 1 hits



neuralized (neur):

Annotation Number : CG11988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002932
Gbrowse : chr3R:4846067-4865189 (-) // 100.0 //
Probeset : 1638682_a_at
Accessions : protein= NP_001163563; /// NP_476652; /// NP_731309; /// NP_731310; /// NP_731311;, nucleotide= NM_001170092; /// NM_057304; /// NM_169255; /// NM_169256; /// NM_169257;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0002932.
BDGP gene expression has embryonic in situ data for neur: 65 pix of staining in 30 body parts.
BioGrid reports that CG11988 interacts with CG18584 CG5185 CG8364 CG3096 CG3619 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG3936 CG3936 CG7425 CG17757 .
TRiP has 2 RNAi stocks for FBgn0002932 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002932 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 24 of 4 0.70Down
Head38 34 of 4 0.60Down
Eye40 34 of 4 0.63Down
Thoracicoabdominal ganglion46 24 of 4 0.70Down
Salivary gland30 44 of 4 0.48Down
Crop19 04 of 4 0.30Down
Midgut127 84 of 4 2.00Up
Tubule75 94 of 4 1.20None
Hindgut43 34 of 4 0.70Down
Heart32 54 of 4 0.51Down
Fat body23 24 of 4 0.37Down
Ovary183 74 of 4 2.90Up
Testis10 04 of 4 0.20Down
Male accessory glands16 14 of 4 0.30Down
Virgin spermatheca37 54 of 4 0.59Down
Mated spermatheca41 34 of 4 0.65Down
Adult carcass17 23 of 4 0.30Down
Larval CNS417 684 of 4 6.53Up
Larval Salivary gland53 34 of 4 0.84None
Larval midgut52 44 of 4 0.83None
Larval tubule66 44 of 4 1.00None
Larval hindgut59 24 of 4 0.93None
Larval fat body15 14 of 4 0.20Down
Larval trachea36 24 of 4 0.57Down
Larval carcass25 24 of 4 0.40Down
S2 cells (growing)101 34 of 4 1.59Up
Whole fly63 34 of 4

Looking for CG11988-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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