FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11988-RC through 18771 annotations produced 1 hits

neuralized (neur):

Annotation Number : CG11988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002932
Gbrowse : chr3R:4846067-4865189 (-) // 100.0 //
Probeset : 1638682_a_at
Accessions : protein= NP_001163563; /// NP_476652; /// NP_731309; /// NP_731310; /// NP_731311;, nucleotide= NM_001170092; /// NM_057304; /// NM_169255; /// NM_169256; /// NM_169257;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0002932.
BDGP gene expression has embryonic in situ data for neur: 65 pix of staining in 30 body parts.
BioGrid reports that CG11988 interacts with CG18584 CG5185 CG8364 CG3096 CG3619 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG3936 CG3936 CG7425 CG17757 .
TRiP has 2 RNAi stocks for FBgn0002932 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002932 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	45 ± 2	4 of 4	0.70	Down
Head	38 ± 3	4 of 4	0.60	Down
Eye	40 ± 3	4 of 4	0.63	Down
Thoracicoabdominal ganglion	46 ± 2	4 of 4	0.70	Down
Salivary gland	30 ± 4	4 of 4	0.48	Down
Crop	19 ± 0	4 of 4	0.30	Down
Midgut	127 ± 8	4 of 4	2.00	Up
Tubule	75 ± 9	4 of 4	1.20	None
Hindgut	43 ± 3	4 of 4	0.70	Down
Heart	32 ± 5	4 of 4	0.51	Down
Fat body	23 ± 2	4 of 4	0.37	Down
Ovary	183 ± 7	4 of 4	2.90	Up
Testis	10 ± 0	4 of 4	0.20	Down
Male accessory glands	16 ± 1	4 of 4	0.30	Down
Virgin spermatheca	37 ± 5	4 of 4	0.59	Down
Mated spermatheca	41 ± 3	4 of 4	0.65	Down
Adult carcass	17 ± 2	3 of 4	0.30	Down
Larval CNS	417 ± 68	4 of 4	6.53	Up
Larval Salivary gland	53 ± 3	4 of 4	0.84	None
Larval midgut	52 ± 4	4 of 4	0.83	None
Larval tubule	66 ± 4	4 of 4	1.00	None
Larval hindgut	59 ± 2	4 of 4	0.93	None
Larval fat body	15 ± 1	4 of 4	0.20	Down
Larval trachea	36 ± 2	4 of 4	0.57	Down
Larval carcass	25 ± 2	4 of 4	0.40	Down
S2 cells (growing)	101 ± 3	4 of 4	1.59	Up
Whole fly	63 ± 3	4 of 4

Looking for CG11988-RC. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720