FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11992-RA through 18771 annotations produced 1 hits

relish (Rel):

Annotation Number : CG11992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014018
Gbrowse : chr3R:4869899-4873699 (-) // 100.0 //
Probeset : 1627376_at
Accessions : protein= NP_477094; /// NP_996187; /// NP_996188; /// NP_996189;, nucleotide= NM_057746; /// NM_206465; /// NM_206466; /// NM_206467;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006955 // immune response // inferred from expression pattern
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0014018.
BDGP gene expression has embryonic in situ data for Rel: 77 pix of staining in 24 body parts.
Homophila reports that CG11992 is a close match (6e-12) to human gene IKBA;NFKBIA (NP_065390), a gene associated with Ectodermal dysplasia, anhidrotic, with T-cell immunodeficiency, 612132 (3).
BioGrid reports that CG11992 interacts with CG6134 CG5490 .
TRiP has 2 RNAi stocks for FBgn0014018 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014018 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	114 ± 6	4 of 4	0.50	Down
Head	445 ± 35	4 of 4	1.80	Up
Eye	309 ± 38	4 of 4	1.24	None
Thoracicoabdominal ganglion	147 ± 5	4 of 4	0.60	Down
Salivary gland	338 ± 20	4 of 4	1.35	Up
Crop	724 ± 10	4 of 4	2.90	Up
Midgut	517 ± 15	4 of 4	2.10	Up
Tubule	783 ± 91	4 of 4	3.10	Up
Hindgut	735 ± 33	4 of 4	2.90	Up
Heart	629 ± 169	4 of 4	2.52	None
Fat body	560 ± 151	4 of 4	2.24	Up
Ovary	211 ± 6	4 of 4	0.80	None
Testis	40 ± 3	4 of 4	0.20	Down
Male accessory glands	380 ± 22	4 of 4	1.50	Up
Virgin spermatheca	996 ± 51	4 of 4	3.98	Up
Mated spermatheca	824 ± 31	4 of 4	3.29	Up
Adult carcass	426 ± 34	4 of 4	1.70	Up
Larval CNS	120 ± 9	4 of 4	0.48	Down
Larval Salivary gland	250 ± 10	4 of 4	1.00	None
Larval midgut	443 ± 32	4 of 4	1.77	Up
Larval tubule	398 ± 12	4 of 4	1.60	Up
Larval hindgut	643 ± 4	4 of 4	2.57	Up
Larval fat body	685 ± 55	4 of 4	2.70	Up
Larval trachea	555 ± 192	4 of 4	2.22	Up
Larval carcass	558 ± 66	4 of 4	2.23	Up
S2 cells (growing)	762 ± 24	4 of 4	3.05	Up
Whole fly	250 ± 14	4 of 4

Looking for CG11992-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720