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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11994-RA through 18771 annotations produced 1 hits



Adenosine deaminase (Ada):

Annotation Number : CG11994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037661
Gbrowse : chr3R:4890900-4891974 (+) // 100.0 //
Probeset : 1637806_at
Accessions : protein= NP_649866;, nucleotide= NM_141609;
Interpro : 0004000 // adenosine deaminase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase acti
FlyMine data for FBgn0037661.
Homophila reports that CG11994 is a close match (8e-14) to human gene ADA (NP_000013), a gene associated with Adenosine deaminase deficiency, partial, 102700 (3);Severe combined immunodeficiency due to ADA deficiency, 102700 (3).
TRiP has 1 RNAi stocks for FBgn0037661 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037661 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head12 12 of 4 0.60None
Eye18 23 of 4 0.86None
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland20 30 of 4 1.00None
Crop10 20 of 4 0.50None
Midgut20 22 of 4 1.00None
Tubule13 10 of 4 0.60Down
Hindgut18 12 of 4 0.90None
Heart29 24 of 4 1.42None
Fat body24 64 of 4 1.15None
Ovary28 34 of 4 1.40None
Testis68 14 of 4 3.30Up
Male accessory glands30 14 of 4 1.50None
Virgin spermatheca16 30 of 4 0.80None
Mated spermatheca31 32 of 4 1.51None
Adult carcass15 50 of 4 0.80None
Larval CNS28 74 of 4 1.39None
Larval Salivary gland38 14 of 4 1.85Up
Larval midgut7 10 of 4 0.37Down
Larval tubule13 10 of 4 0.70None
Larval hindgut15 13 of 4 0.74None
Larval fat body20 41 of 4 1.00None
Larval trachea39 34 of 4 1.89Up
Larval carcass30 64 of 4 1.48None
S2 cells (growing)30 14 of 4 1.47None
Whole fly20 43 of 4

Looking for CG11994-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime