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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11999-RA through 18771 annotations produced 1 hits


Annotation Number : CG11999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037312
Gbrowse : chr3R:1179438-1180469 (-) // 100.0 //
Probeset : 1623356_at
Accessions : protein= NP_649527;, nucleotide= NM_141270;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037312.
Homophila reports that CG11999 is a close match (2e-13) to human gene POMT2 (NP_037514), a gene associated with Walker-Warburg syndrome, 236670 (3).
BioGrid reports that CG11999 interacts with CG14887 .
TRiP has 1 RNAi stocks for FBgn0037312 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037312 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 44 of 4 0.80Down
Head137 74 of 4 0.70Down
Eye157 64 of 4 0.82Down
Thoracicoabdominal ganglion149 64 of 4 0.80Down
Salivary gland260 214 of 4 1.36Up
Crop135 74 of 4 0.70Down
Midgut224 54 of 4 1.20Up
Tubule139 134 of 4 0.70Down
Hindgut127 94 of 4 0.70Down
Heart294 104 of 4 1.53Up
Fat body170 134 of 4 0.89Down
Ovary266 134 of 4 1.40Up
Testis122 34 of 4 0.60Down
Male accessory glands1228 284 of 4 6.40Up
Virgin spermatheca199 94 of 4 1.04None
Mated spermatheca244 264 of 4 1.27None
Adult carcass111 34 of 4 0.60Down
Larval CNS226 244 of 4 1.18None
Larval Salivary gland878 304 of 4 4.57Up
Larval midgut247 204 of 4 1.29None
Larval tubule316 104 of 4 1.60Up
Larval hindgut159 94 of 4 0.83Down
Larval fat body150 274 of 4 0.80None
Larval trachea279 594 of 4 1.46None
Larval carcass150 114 of 4 0.79Down
S2 cells (growing)510 84 of 4 2.66Up
Whole fly192 44 of 4

Looking for CG11999-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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