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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12000-RA through 18771 annotations produced 1 hits



beta-type 4 subunit (Prosbeta7):

Annotation Number : CG12000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250746
Gbrowse : chr3R:1182733-1184086 (-) // 100.0 //
Probeset : 1630851_s_at
Accessions : protein= NP_649529; /// NP_730922;, nucleotide= NM_141272; /// NM_169049;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author stat
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0250746.
BioGrid reports that CG12000 interacts with CG13840 CG15352 CG5009 .
TRiP has 1 RNAi stocks for FBgn0250746 available for purchase.
VDRC has 3 RNAi stocks for FBgn0250746 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain344 94 of 4 0.30Down
Head663 94 of 4 0.70Down
Eye851 154 of 4 0.84Down
Thoracicoabdominal ganglion450 164 of 4 0.40Down
Salivary gland570 244 of 4 0.56Down
Crop978 244 of 4 1.00None
Midgut988 224 of 4 1.00None
Tubule905 594 of 4 0.90None
Hindgut744 124 of 4 0.70Down
Heart3774 2504 of 4 3.71Up
Fat body2352 1524 of 4 2.31Up
Ovary1136 24 of 4 1.10Up
Testis977 244 of 4 1.00None
Male accessory glands923 554 of 4 0.90None
Virgin spermatheca844 154 of 4 0.83Down
Mated spermatheca797 654 of 4 0.78Down
Adult carcass1950 234 of 4 1.90Up
Larval CNS1054 654 of 4 1.04None
Larval Salivary gland1528 1014 of 4 1.50Up
Larval midgut1491 1364 of 4 1.47Up
Larval tubule2464 544 of 4 2.40Up
Larval hindgut1296 884 of 4 1.28Up
Larval fat body1363 984 of 4 1.30Up
Larval trachea1380 1714 of 4 1.36Up
Larval carcass2264 1854 of 4 2.23Up
S2 cells (growing)1066 164 of 4 1.05None
Whole fly1016 224 of 4

Looking for CG12000-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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