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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12001-RA through 18771 annotations produced 1 hits


Annotation Number : CG12001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037265
Gbrowse : chr3R:480549-483707 (+) // 100.0 //
Probeset : 1625840_at
Accessions : protein= NP_649485;, nucleotide= NM_141228;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037265.
BDGP gene expression has embryonic in situ data for CG12001: 4 pix of staining in 1 body parts.
Homophila reports that CG12001 is a close match (3e-30) to human gene SPG20 (NP_055902), a gene associated with Troyer syndrome, 275900 (3).
BioGrid reports that CG12001 interacts with CG14271 CG33144 CG31038 CG8362 .
TRiP has 1 RNAi stocks for FBgn0037265 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037265 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 14 of 4 1.50Up
Head74 54 of 4 1.50Up
Eye90 64 of 4 1.85Up
Thoracicoabdominal ganglion84 44 of 4 1.70Up
Salivary gland106 44 of 4 2.17Up
Crop222 34 of 4 4.60Up
Midgut41 34 of 4 0.80None
Tubule169 74 of 4 3.50Up
Hindgut133 54 of 4 2.70Up
Heart132 44 of 4 2.71Up
Fat body145 124 of 4 2.97Up
Ovary54 14 of 4 1.10None
Testis21 14 of 4 0.40Down
Male accessory glands51 34 of 4 1.10None
Virgin spermatheca139 74 of 4 2.84Up
Mated spermatheca114 64 of 4 2.34Up
Adult carcass108 54 of 4 2.20Up
Larval CNS36 14 of 4 0.75Down
Larval Salivary gland18 24 of 4 0.38Down
Larval midgut48 44 of 4 0.99None
Larval tubule116 54 of 4 2.40Up
Larval hindgut35 24 of 4 0.72Down
Larval fat body85 94 of 4 1.70Up
Larval trachea31 44 of 4 0.64Down
Larval carcass36 34 of 4 0.75Down
S2 cells (growing)43 14 of 4 0.90None
Whole fly48 24 of 4

Looking for CG12001-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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