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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12003-RA through 18771 annotations produced 1 hits


Annotation Number : CG12003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035234
Gbrowse : chr3L:1565391-1567802 (+) // 100.0 //
Probeset : 1625238_at
Accessions : protein= NP_647625;, nucleotide= NM_139368;
FlyMine data for FBgn0035234.
BDGP gene expression has embryonic in situ data for CG12003: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0035234 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.80None
Head6 12 of 4 1.00None
Eye2 00 of 4 0.43None
Thoracicoabdominal ganglion7 20 of 4 1.20None
Salivary gland17 20 of 4 2.82Up
Crop9 10 of 4 1.50None
Midgut9 40 of 4 1.50None
Tubule7 00 of 4 1.20None
Hindgut7 10 of 4 1.20None
Heart2 10 of 4 0.43None
Fat body5 50 of 4 0.91None
Ovary3 10 of 4 0.60None
Testis4 00 of 4 0.80None
Male accessory glands9 20 of 4 1.50None
Virgin spermatheca7 20 of 4 1.17None
Mated spermatheca4 10 of 4 0.78None
Adult carcass7 00 of 4 1.20None
Larval CNS6 20 of 4 1.08None
Larval Salivary gland8 20 of 4 1.42None
Larval midgut4 10 of 4 0.79None
Larval tubule12 11 of 4 2.10None
Larval hindgut9 00 of 4 1.54None
Larval fat body9 20 of 4 1.50None
Larval trachea5 10 of 4 0.85None
Larval carcass14 00 of 4 2.37Up
S2 cells (growing)7 00 of 4 1.13None
Whole fly6 20 of 4

Looking for CG12003-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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