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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12012-RA through 18771 annotations produced 1 hits



(CG12012):

Annotation Number : CG12012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035444
Gbrowse : chr3L:3376880-3377300 (+) // 100.0 //
Probeset : 1634135_at
Accessions : protein= NP_001163339; /// NP_647813;, nucleotide= NM_001169868; /// NM_139556;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035444.
TRiP has 1 RNAi stocks for FBgn0035444 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035444 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 74 of 4 1.20Up
Head177 84 of 4 1.40Up
Eye207 124 of 4 1.62Up
Thoracicoabdominal ganglion157 44 of 4 1.20Up
Salivary gland536 204 of 4 4.20Up
Crop260 84 of 4 2.00Up
Midgut224 34 of 4 1.80Up
Tubule92 14 of 4 0.70Down
Hindgut282 54 of 4 2.20Up
Heart554 384 of 4 4.34Up
Fat body208 194 of 4 1.63Up
Ovary174 14 of 4 1.40Up
Testis37 24 of 4 0.30Down
Male accessory glands143 94 of 4 1.10None
Virgin spermatheca178 84 of 4 1.40Up
Mated spermatheca174 64 of 4 1.37Up
Adult carcass206 114 of 4 1.60Up
Larval CNS98 34 of 4 0.77Down
Larval Salivary gland282 84 of 4 2.21Up
Larval midgut255 134 of 4 2.00Up
Larval tubule408 94 of 4 3.20Up
Larval hindgut210 124 of 4 1.65Up
Larval fat body569 634 of 4 4.50Up
Larval trachea189 144 of 4 1.48Up
Larval carcass106 114 of 4 0.83None
S2 cells (growing)453 84 of 4 3.55Up
Whole fly127 44 of 4

Looking for CG12012-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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