FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12013-RB through 18771 annotations produced 1 hits

PHGPx (PHGPx):

Annotation Number : CG12013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035438
Gbrowse : chr3L:3326290-3328626 (+) // 100.0 //
Probeset : 1628257_s_at
Accessions : protein= NP_728868; /// NP_728869; /// NP_728870;, nucleotide= NM_168024; /// NM_168025; /// NM_168026;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from se
Interpro : 0004601 // peroxidase activity // inferred from direct assay /// 0004601 // peroxidase activity // inferred from electro
FlyMine data for FBgn0035438.
BDGP gene expression has embryonic in situ data for CG12013: 16 pix of staining in 7 body parts.
Homophila reports that CG12013 is a close match (1e-13) to human gene GPX1 (NP_958799), a gene associated with Hemolytic anemia due to glutathione peroxidase deficiency (1).
BioGrid reports that CG12013 interacts with CG4795 .
TRiP has 3 RNAi stocks for FBgn0035438 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035438 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	649 ± 13	4 of 4	0.70	Down
Head	1285 ± 39	4 of 4	1.40	Up
Eye	1094 ± 45	4 of 4	1.19	Up
Thoracicoabdominal ganglion	962 ± 20	4 of 4	1.00	None
Salivary gland	1031 ± 53	4 of 4	1.12	None
Crop	2044 ± 41	4 of 4	2.20	Up
Midgut	1704 ± 38	4 of 4	1.90	Up
Tubule	1694 ± 63	4 of 4	1.80	Up
Hindgut	1701 ± 29	4 of 4	1.90	Up
Heart	2779 ± 70	4 of 4	3.03	Up
Fat body	2901 ± 178	4 of 4	3.16	Up
Ovary	833 ± 11	4 of 4	0.90	None
Testis	439 ± 16	4 of 4	0.50	Down
Male accessory glands	694 ± 11	4 of 4	0.80	Down
Virgin spermatheca	3089 ± 151	4 of 4	3.37	Up
Mated spermatheca	2872 ± 95	4 of 4	3.13	Up
Adult carcass	2289 ± 38	4 of 4	2.50	Up
Larval CNS	853 ± 34	4 of 4	0.93	None
Larval Salivary gland	1430 ± 55	4 of 4	1.56	Up
Larval midgut	1934 ± 32	4 of 4	2.11	Up
Larval tubule	1809 ± 70	4 of 4	2.00	Up
Larval hindgut	1301 ± 54	4 of 4	1.42	Up
Larval fat body	3698 ± 535	4 of 4	4.00	Up
Larval trachea	1302 ± 45	4 of 4	1.42	Up
Larval carcass	1849 ± 146	4 of 4	2.02	Up
S2 cells (growing)	1613 ± 29	4 of 4	1.76	Up
Whole fly	917 ± 53	4 of 4

Looking for CG12013-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720