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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12020-RA through 18771 annotations produced 1 hits



(CG12020):

Annotation Number : CG12020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035273
Gbrowse : chr3L:1797304-1798610 (+) // 100.0 //
Probeset : 1637782_at
Accessions : protein= NP_647662;, nucleotide= NM_139405;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred f
FlyMine data for FBgn0035273.
BioGrid reports that CG12020 interacts with CG13701 CG4766 CG1324 CG15423 CG17342 CG6416 CG9665 .
VDRC has 2 RNAi stocks for FBgn0035273 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.16Down
Crop3 ± 10 of 4 0.10Down
Midgut7 ± 20 of 4 0.20Down
Tubule5 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart4 ± 00 of 4 0.09Down
Fat body3 ± 10 of 4 0.08Down
Ovary3 ± 00 of 4 0.10Down
Testis663 ± 114 of 414.50Up
Male accessory glands7 ± 30 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.08Down
Larval midgut7 ± 21 of 4 0.16Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut3 ± 00 of 4 0.07Down
Larval fat body36 ± 232 of 4 0.80None
Larval trachea6 ± 40 of 4 0.13Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly45 ± 14 of 4

Looking for CG12020-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime