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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12021-RB through 18771 annotations produced 1 hits



discs lost (Patj):

Annotation Number : CG12021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0067864
Gbrowse : chr3L:1798808-1802184 (+) // 100.0 //
Probeset : 1630671_s_at
Accessions : protein= NP_477342; /// NP_599144; /// NP_728674;, nucleotide= NM_057994; /// NM_134317; /// NM_167917;
Pathway : 0005635 // nuclear envelope // non-traceable author statement /// 0005737 // cytoplasm // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0067864.
Homophila reports that CG12021 is a close match (4e-17) to human gene DLG3;MRX90;NEDLG;SAP102 (NP_066943), a gene associated with Mental retardation, X-linked-90 (3).
BioGrid reports that CG12021 interacts with CG13871 CG18124 CG9099 CG6383 .
TRiP has 3 RNAi stocks for FBgn0067864 available for purchase.
VDRC has 2 RNAi stocks for FBgn0067864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 24 of 4 1.10None
Head126 44 of 4 1.00None
Eye268 34 of 4 2.15Up
Thoracicoabdominal ganglion133 24 of 4 1.10None
Salivary gland167 64 of 4 1.34Up
Crop143 34 of 4 1.10None
Midgut108 34 of 4 0.90None
Tubule88 84 of 4 0.70Down
Hindgut134 44 of 4 1.10None
Heart64 14 of 4 0.51Down
Fat body49 71 of 4 0.39Down
Ovary155 54 of 4 1.20Up
Testis99 14 of 4 0.80Down
Male accessory glands252 84 of 4 2.00Up
Virgin spermatheca40 34 of 4 0.32Down
Mated spermatheca50 44 of 4 0.40Down
Adult carcass82 24 of 4 0.70Down
Larval CNS118 34 of 4 0.94None
Larval Salivary gland277 54 of 4 2.22Up
Larval midgut111 91 of 4 0.89None
Larval tubule142 74 of 4 1.10None
Larval hindgut122 64 of 4 0.98None
Larval fat body91 74 of 4 0.70Down
Larval trachea106 84 of 4 0.85None
Larval carcass148 34 of 4 1.18Up
S2 cells (growing)147 24 of 4 1.18Up
Whole fly125 64 of 4

Looking for CG12021-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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