FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12023-RA through 18771 annotations produced 2 hits

GV1 (GV1):

Annotation Number : CG12023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027790
Gbrowse : chr3L:1810588-1822220 (+) // 100.0 //
Probeset : 1631252_a_at
Accessions : protein= NP_647665; /// NP_728678;, nucleotide= NM_139408; /// NM_167920;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interactio
FlyMine data for FBgn0027790.
BioGrid reports that CG12023 interacts with CG4584 .
VDRC has 5 RNAi stocks for FBgn0027790 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 2	0 of 4	0.30	Down
Head	347 ± 19	4 of 4	5.80	Up
Eye	558 ± 31	4 of 4	9.26	Up
Thoracicoabdominal ganglion	9 ± 1	0 of 4	0.20	Down
Salivary gland	118 ± 6	4 of 4	1.96	Up
Crop	1037 ± 18	4 of 4	17.20	Up
Midgut	22 ± 3	0 of 4	0.40	Down
Tubule	8 ± 0	0 of 4	0.10	Down
Hindgut	417 ± 13	4 of 4	6.90	Up
Heart	24 ± 2	4 of 4	0.40	Down
Fat body	23 ± 8	4 of 4	0.39	Down
Ovary	10 ± 1	2 of 4	0.20	Down
Testis	7 ± 2	0 of 4	0.10	Down
Male accessory glands	14 ± 4	0 of 4	0.20	Down
Virgin spermatheca	148 ± 12	4 of 4	2.47	Up
Mated spermatheca	218 ± 35	4 of 4	3.62	Up
Adult carcass	268 ± 12	4 of 4	4.50	Up
Larval CNS	6 ± 1	0 of 4	0.11	Down
Larval Salivary gland	25 ± 3	0 of 4	0.43	Down
Larval midgut	25 ± 6	0 of 4	0.42	Down
Larval tubule	11 ± 2	0 of 4	0.20	Down
Larval hindgut	94 ± 10	4 of 4	1.56	Up
Larval fat body	18 ± 0	0 of 4	0.30	Down
Larval trachea	429 ± 38	4 of 4	7.11	Up
Larval carcass	168 ± 62	4 of 4	2.79	None
S2 cells (growing)	5 ± 1	0 of 4	0.09	Down
Whole fly	60 ± 5	4 of 4

GV1 (GV1):

Annotation Number : CG12023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027790
Gbrowse : chr3L:1810588-1822903 (+) // 100.0 //
Probeset : 1626287_at
Accessions : protein= NP_647665; /// NP_728678;, nucleotide= NM_139408; /// NM_167920;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interactio
FlyMine data for FBgn0027790.
BioGrid reports that CG12023 interacts with CG4584 .
VDRC has 5 RNAi stocks for FBgn0027790 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	0.30	Down
Head	98 ± 2	4 of 4	6.00	Up
Eye	393 ± 15	4 of 4	23.99	Up
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.20	Down
Salivary gland	44 ± 7	4 of 4	2.70	Up
Crop	246 ± 11	4 of 4	15.10	Up
Midgut	4 ± 2	0 of 4	0.30	Down
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	91 ± 10	4 of 4	5.60	Up
Heart	10 ± 1	2 of 4	0.64	None
Fat body	9 ± 3	3 of 4	0.60	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	103 ± 17	4 of 4	6.29	Up
Mated spermatheca	131 ± 14	4 of 4	8.03	Up
Adult carcass	57 ± 2	4 of 4	3.50	Up
Larval CNS	4 ± 0	3 of 4	0.30	Down
Larval Salivary gland	9 ± 1	0 of 4	0.60	Down
Larval midgut	3 ± 2	0 of 4	0.23	Down
Larval tubule	2 ± 0	0 of 4	0.20	Down
Larval hindgut	23 ± 3	3 of 4	1.41	None
Larval fat body	3 ± 1	0 of 4	0.20	Down
Larval trachea	190 ± 19	4 of 4	11.63	Up
Larval carcass	70 ± 26	4 of 4	4.32	None
S2 cells (growing)	0 ± 0	0 of 4	0.05	Down
Whole fly	16 ± 1	4 of 4

Looking for CG12023-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720