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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12035-RA through 18771 annotations produced 1 hits


Annotation Number : CG12035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035263
Gbrowse : chr3L:1724389-1725644 (+) // 100.0 //
Probeset : 1627273_at
Accessions : protein= NP_647652;, nucleotide= NM_139395;
FlyMine data for FBgn0035263.
BDGP gene expression has embryonic in situ data for CG12035: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0035263 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 10 of 4 0.10Down
Eye3 10 of 4 0.10Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland3 10 of 4 0.10Down
Crop1 00 of 4 0.00Down
Midgut6 00 of 4 0.20Down
Tubule4 10 of 4 0.10Down
Hindgut3 10 of 4 0.10Down
Heart2 10 of 4 0.07Down
Fat body3 30 of 4 0.08Down
Ovary2 10 of 4 0.00Down
Testis391 184 of 410.00Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.02Down
Adult carcass6 30 of 4 0.20Down
Larval CNS1 10 of 4 0.04Down
Larval Salivary gland0 00 of 4 0.02Down
Larval midgut5 10 of 4 0.14Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body37 242 of 4 1.00None
Larval trachea6 30 of 4 0.17Down
Larval carcass2 00 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly39 14 of 4

Looking for CG12035-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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