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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12045-RA through 18771 annotations produced 1 hits



CG12045 (Cpr100A):

Annotation Number : CG12045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039805
Gbrowse : chr3R:26693244-26694908 (+) // 100.0 //
Probeset : 1629919_at
Accessions : protein= NP_651829;, nucleotide= NM_143572;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0039805.
BDGP gene expression has embryonic in situ data for CG12045: 6 pix of staining in 1 body parts.
BioGrid reports that CG12045 interacts with CG12045 CG12992 CG15080 CG15884 CG2560 CG5767 CG7021 CG14153 CG17117 CG17559 CG3048 CG9036 CG9083 CG9411 .
VDRC has 3 RNAi stocks for FBgn0039805 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head63 ± 44 of 4 2.20Up
Eye86 ± 84 of 4 2.92Up
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland11 ± 32 of 4 0.40Down
Crop4 ± 20 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart45 ± 254 of 4 1.56None
Fat body6 ± 22 of 4 0.23Down
Ovary2 ± 00 of 4 0.10Down
Testis10 ± 14 of 4 0.40Down
Male accessory glands7 ± 20 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.12Down
Mated spermatheca6 ± 01 of 4 0.21Down
Adult carcass117 ± 214 of 4 4.00Up
Larval CNS2 ± 00 of 4 0.10Down
Larval Salivary gland7 ± 11 of 4 0.25Down
Larval midgut8 ± 00 of 4 0.28Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 11 of 4 0.10Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea2700 ± 4534 of 491.63Up
Larval carcass45 ± 74 of 4 1.54None
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly29 ± 34 of 4

Looking for CG12045-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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