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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12052-RN through 18771 annotations produced 2 hits



longitudinals lacking (lola):

Annotation Number : CG12052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005630
Gbrowse : chr2R:6375366-6422583 (-) // 100.0 //
Probeset : 1623411_at
Accessions : protein= NP_001027400; /// NP_524766; /// NP_724945; /// NP_724946; /// NP_724949; /// NP_724950; /// NP_724951; /// NP_724952; /// NP_724953; /// NP_788308; /// NP_788309; /// NP_788310; /// NP_788311; /// NP_788312; /// NP_788313; /// NP_788314; /// NP_788315; /// NP_788316; /// NP_788317; /// NP_788318; /// NP_788319; /// NP_788320; /// NP_995804; /// NP_995805; /// NP_995806; /// NP_995807;, nucleotide= NM_001032229; /// NM_080027; /// NM_170617; /// NM_170618; /// NM_170619; /// NM_170620; /// NM_170621; /// NM_170622; /// NM_170623; /// NM_176128; /// NM_176129; /// NM_176130; /// NM_176131; /// NM_176132; /// NM_176133; /// NM_176134; /// NM_176135; /// NM_176136; /// NM_176137; /// NM_176138; /// NM_176139; /// NM_176140; /// NM_206082; /// NM_206083; /// NM_206084; /// NM_206085;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from mu
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
FlyMine data for FBgn0005630.
BDGP gene expression has embryonic in situ data for lola: 13 pix of staining in 9 body parts.
BioGrid reports that CG12052 interacts with CG3924 CG4570 CG5393 CG8936 CG12052 CG13022 CG13405 CG13777 CG14119 CG14222 CG14850 CG17625 CG2009 CG2199 CG32369 CG33017 CG3400 CG3880 CG3891 CG5134 CG6459 CG7313 CG7838 CG7952 CG8355 CG3936 CG6297 CG13521 .
TRiP has 2 RNAi stocks for FBgn0005630 available for purchase.
VDRC has 10 RNAi stocks for FBgn0005630 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 10 of 4 0.30Down
Head14 10 of 4 0.30Down
Eye17 22 of 4 0.36Down
Thoracicoabdominal ganglion13 20 of 4 0.30Down
Salivary gland26 40 of 4 0.54Down
Crop43 34 of 4 0.90None
Midgut20 30 of 4 0.40Down
Tubule13 00 of 4 0.30Down
Hindgut29 31 of 4 0.60Down
Heart14 22 of 4 0.29Down
Fat body22 30 of 4 0.45Down
Ovary90 04 of 4 1.80Up
Testis9 10 of 4 0.20Down
Male accessory glands51 62 of 4 1.00None
Virgin spermatheca18 10 of 4 0.37Down
Mated spermatheca17 40 of 4 0.35Down
Adult carcass13 40 of 4 0.30Down
Larval CNS31 113 of 4 0.64Down
Larval Salivary gland48 23 of 4 0.98None
Larval midgut5 30 of 4 0.11Down
Larval tubule13 30 of 4 0.30Down
Larval hindgut22 20 of 4 0.46Down
Larval fat body15 20 of 4 0.30Down
Larval trachea16 43 of 4 0.33Down
Larval carcass19 20 of 4 0.40Down
S2 cells (growing)43 31 of 4 0.87None
Whole fly49 44 of 4



longitudinals lacking (lola):

Annotation Number : CG12052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005630
Gbrowse : chr2R:6419508-6421862 (-) // 100.0 //
Probeset : 1634495_s_at
Accessions : protein= NP_001027400; /// NP_524766; /// NP_724945; /// NP_724946; /// NP_724949; /// NP_724950; /// NP_724951; /// NP_724952; /// NP_724953; /// NP_788308; /// NP_788309; /// NP_788310; /// NP_788311; /// NP_788312; /// NP_788313; /// NP_788314; /// NP_788315; /// NP_788316; /// NP_788317; /// NP_788318; /// NP_788319; /// NP_788320; /// NP_995804; /// NP_995805; /// NP_995806; /// NP_995807;, nucleotide= NM_001032229; /// NM_080027; /// NM_170617; /// NM_170618; /// NM_170619; /// NM_170620; /// NM_170621; /// NM_170622; /// NM_170623; /// NM_176128; /// NM_176129; /// NM_176130; /// NM_176131; /// NM_176132; /// NM_176133; /// NM_176134; /// NM_176135; /// NM_176136; /// NM_176137; /// NM_176138; /// NM_176139; /// NM_176140; /// NM_206082; /// NM_206083; /// NM_206084; /// NM_206085;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from mu
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
FlyMine data for FBgn0005630.
BDGP gene expression has embryonic in situ data for lola: 13 pix of staining in 9 body parts.
BioGrid reports that CG12052 interacts with CG3924 CG4570 CG5393 CG8936 CG12052 CG13022 CG13405 CG13777 CG14119 CG14222 CG14850 CG17625 CG2009 CG2199 CG32369 CG33017 CG3400 CG3880 CG3891 CG5134 CG6459 CG7313 CG7838 CG7952 CG8355 CG3936 CG6297 CG13521 .
TRiP has 2 RNAi stocks for FBgn0005630 available for purchase.
VDRC has 10 RNAi stocks for FBgn0005630 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain394 104 of 4 2.10Up
Head180 194 of 4 1.00None
Eye164 164 of 4 0.89None
Thoracicoabdominal ganglion178 174 of 4 1.00None
Salivary gland87 114 of 4 0.47Down
Crop157 104 of 4 0.90None
Midgut34 24 of 4 0.20Down
Tubule32 12 of 4 0.20Down
Hindgut110 64 of 4 0.60Down
Heart62 34 of 4 0.34Down
Fat body46 64 of 4 0.25Down
Ovary341 174 of 4 1.90Up
Testis44 44 of 4 0.20Down
Male accessory glands72 54 of 4 0.40Down
Virgin spermatheca23 24 of 4 0.13Down
Mated spermatheca26 32 of 4 0.14Down
Adult carcass85 84 of 4 0.50Down
Larval CNS275 184 of 4 1.49Up
Larval Salivary gland66 64 of 4 0.36Down
Larval midgut22 32 of 4 0.12Down
Larval tubule59 14 of 4 0.30Down
Larval hindgut48 54 of 4 0.26Down
Larval fat body52 64 of 4 0.30Down
Larval trachea82 84 of 4 0.45Down
Larval carcass51 24 of 4 0.28Down
S2 cells (growing)239 104 of 4 1.30Up
Whole fly184 164 of 4

Looking for CG12052-RN. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime