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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12056-RA through 18771 annotations produced 1 hits



(CG12056):

Annotation Number : CG12056
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030099
Gbrowse : chrX:9086701-9087660 (+) // 100.0 //
Probeset : 1638297_at
Accessions : protein= NP_572535;, nucleotide= NM_132307;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0020037 // heme binding // inferred from electronic
FlyMine data for FBgn0030099.
BioGrid reports that CG12056 interacts with CG33103 .
VDRC has 1 RNAi stocks for FBgn0030099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 14 of 4 2.00Up
Head73 44 of 4 2.00Up
Eye132 14 of 4 3.57Up
Thoracicoabdominal ganglion96 44 of 4 2.60Up
Salivary gland126 114 of 4 3.40Up
Crop111 84 of 4 3.00Up
Midgut50 24 of 4 1.40Up
Tubule42 14 of 4 1.10Up
Hindgut60 54 of 4 1.60Up
Heart56 44 of 4 1.51Up
Fat body45 64 of 4 1.21None
Ovary35 14 of 4 0.90None
Testis27 24 of 4 0.70None
Male accessory glands225 84 of 4 6.10Up
Virgin spermatheca22 04 of 4 0.60Down
Mated spermatheca34 44 of 4 0.94None
Adult carcass70 64 of 4 1.90Up
Larval CNS38 44 of 4 1.03None
Larval Salivary gland112 34 of 4 3.02Up
Larval midgut34 24 of 4 0.93None
Larval tubule46 24 of 4 1.20None
Larval hindgut44 24 of 4 1.19None
Larval fat body35 64 of 4 0.90None
Larval trachea95 24 of 4 2.57Up
Larval carcass58 44 of 4 1.56Up
S2 cells (growing)180 44 of 4 4.86Up
Whole fly37 34 of 4

Looking for CG12056-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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