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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12061-RA through 18771 annotations produced 1 hits



chrXHet:14883-26444 (+) // 100.0 // ():

Annotation Number : CG12061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633435_a_at
Accessions : protein= , nucleotide= NP_001015258; /// NP_001015259; /// NP_001104467;
Pathway : 0055085 // transmembrane transport // inferred from electronic annotation
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head5 ± 10 of 4 0.20Down
Eye2 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.30Down
Salivary gland27 ± 41 of 4 1.19None
Crop3 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.20Down
Hindgut5 ± 20 of 4 0.30Down
Heart1 ± 00 of 4 0.07Down
Fat body11 ± 31 of 4 0.50Down
Ovary5 ± 00 of 4 0.20Down
Testis231 ± 84 of 410.10Up
Male accessory glands10 ± 20 of 4 0.40Down
Virgin spermatheca6 ± 10 of 4 0.29Down
Mated spermatheca5 ± 10 of 4 0.22Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS5 ± 30 of 4 0.25Down
Larval Salivary gland6 ± 20 of 4 0.27Down
Larval midgut3 ± 00 of 4 0.13Down
Larval tubule6 ± 00 of 4 0.30Down
Larval hindgut3 ± 10 of 4 0.17Down
Larval fat body40 ± 144 of 4 1.80None
Larval trachea6 ± 20 of 4 0.28Down
Larval carcass6 ± 10 of 4 0.27Down
S2 cells (growing)4 ± 00 of 4 0.20Down
Whole fly22 ± 24 of 4

Looking for CG12061-RA. 1 entries matched from 18771, in 4 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime