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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12066-RA through 18771 annotations produced 1 hits


cAMP-dependent protein kinase type II (Pka-C2):

Annotation Number : CG12066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000274
Gbrowse : chr3R:26521250-26522860 (-) // 100.0 //
Probeset : 1632787_a_at
Accessions : protein= NP_648654; /// NP_729907; /// NP_729908; /// NP_729909; /// NP_733397;, nucleotide= NM_140397; /// NM_168548; /// NM_168549; /// NM_168550; /// NM_170518;
Pathway : 0005952 // cAMP-dependent protein kinase complex // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0000274.
Homophila reports that CG12066 is a close match (3e-11) to human gene SRK;STD;ZAP70 (NP_001070), a gene associated with Selective T-cell defect (3).
BioGrid reports that CG12066 interacts with CG3050 .
TRiP has 2 RNAi stocks for FBgn0000274 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000274 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.05Down
Crop2 ± 10 of 4 0.00Down
Midgut5 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body2 ± 10 of 4 0.03Down
Ovary14 ± 22 of 4 0.20Down
Testis821 ± 84 of 411.80Up
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass3 ± 00 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.04Down
Larval Salivary gland2 ± 10 of 4 0.04Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body70 ± 353 of 4 1.00None
Larval trachea3 ± 50 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly69 ± 34 of 4

Looking for CG12066-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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