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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12069-RA through 18771 annotations produced 1 hits



PKA-like (CG12069):

Annotation Number : CG12069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039796
Gbrowse : chr3R:26519855-26521220 (-) // 100.0 //
Probeset : 1635054_at
Accessions : protein= NP_651819; /// NP_733396;, nucleotide= NM_143562; /// NM_170517;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0039796.
BDGP gene expression has embryonic in situ data for CG12069: 4 pix of staining in 1 body parts.
Homophila reports that CG12069 is a close match (4e-11) to human gene MAPK10;PRKM10;JNK3 (NP_620448), a gene associated with Epileptic encephalopathy, Lennox-Gastaut type, 606369 (3).
TRiP has 1 RNAi stocks for FBgn0039796 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039796 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland8 ± 30 of 4 0.15Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body2 ± 20 of 4 0.05Down
Ovary1 ± 10 of 4 0.00Down
Testis729 ± 204 of 412.50Up
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.05Down
Larval midgut2 ± 00 of 4 0.05Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body54 ± 263 of 4 0.90None
Larval trachea3 ± 20 of 4 0.07Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly58 ± 44 of 4

Looking for CG12069-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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