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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12070-RA through 18771 annotations produced 1 hits



110kD protein (Sap-r):

Annotation Number : CG12070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000416
Gbrowse : chr3R:26709185-26714795 (-) // 100.0 //
Probeset : 1640070_a_at
Accessions : protein= NP_524597; /// NP_733408;, nucleotide= NM_079858; /// NM_170529;
Pathway : 0005764 // lysosome // inferred from electronic annotation /// 0045169 // fusome // inferred from direct assay
FlyMine data for FBgn0000416.
Homophila reports that CG12070 is a close match (5e-15) to human gene SFTPB;SFTB3;SMDP1 (NP_942140), a gene associated with Surfactant metabolism dysfunction, pulmonary, 1, 265120 (3).
BioGrid reports that CG12070 interacts with CG17870 CG31534 CG3671 CG8155 CG9455 .
VDRC has 2 RNAi stocks for FBgn0000416 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1161 ± 214 of 4 0.70Down
Head2466 ± 1004 of 4 1.40Up
Eye3225 ± 654 of 4 1.81Up
Thoracicoabdominal ganglion1238 ± 204 of 4 0.70Down
Salivary gland6374 ± 2534 of 4 3.57Up
Crop2204 ± 294 of 4 1.20Up
Midgut3458 ± 674 of 4 1.90Up
Tubule4092 ± 634 of 4 2.30Up
Hindgut2612 ± 544 of 4 1.50Up
Heart4529 ± 1794 of 4 2.54Up
Fat body4285 ± 3774 of 4 2.40Up
Ovary1415 ± 264 of 4 0.80Down
Testis1057 ± 394 of 4 0.60Down
Male accessory glands2908 ± 614 of 4 1.60Up
Virgin spermatheca4829 ± 1464 of 4 2.71Up
Mated spermatheca4279 ± 714 of 4 2.40Up
Adult carcass3174 ± 924 of 4 1.80Up
Larval CNS974 ± 304 of 4 0.55Down
Larval Salivary gland2453 ± 344 of 4 1.38Up
Larval midgut5262 ± 1754 of 4 2.95Up
Larval tubule4489 ± 624 of 4 2.50Up
Larval hindgut2969 ± 1294 of 4 1.67Up
Larval fat body2553 ± 2584 of 4 1.40None
Larval trachea1917 ± 924 of 4 1.07None
Larval carcass2566 ± 2324 of 4 1.44Up
S2 cells (growing)3392 ± 264 of 4 1.90Up
Whole fly1783 ± 504 of 4

Looking for CG12070-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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