Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12071-RA through 18771 annotations produced 1 hits



(CG12071):

Annotation Number : CG12071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039808
Gbrowse : chr3R:26702805-26706597 (-) // 100.0 //
Probeset : 1624143_a_at
Accessions : protein= NP_651832; /// NP_788769;, nucleotide= NM_143575; /// NM_176592;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0039808.
Homophila reports that CG12071 is a close match (7e-11) to human gene MRX89;ZNF41 (NP_700359), a gene associated with Mental retardation, X-linked-89 (3).
TRiP has 1 RNAi stocks for FBgn0039808 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039808 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain890 ± 394 of 427.20Up
Head258 ± 174 of 4 7.90Up
Eye681 ± 194 of 420.82Up
Thoracicoabdominal ganglion563 ± 264 of 417.20Up
Salivary gland17 ± 12 of 4 0.52Down
Crop10 ± 12 of 4 0.30Down
Midgut7 ± 20 of 4 0.20Down
Tubule6 ± 10 of 4 0.20Down
Hindgut11 ± 13 of 4 0.30Down
Heart9 ± 12 of 4 0.28Down
Fat body10 ± 02 of 4 0.31Down
Ovary4 ± 10 of 4 0.10Down
Testis11 ± 14 of 4 0.30Down
Male accessory glands10 ± 10 of 4 0.30Down
Virgin spermatheca21 ± 82 of 4 0.64None
Mated spermatheca9 ± 00 of 4 0.28Down
Adult carcass21 ± 30 of 4 0.70None
Larval CNS610 ± 294 of 418.65Up
Larval Salivary gland5 ± 00 of 4 0.16Down
Larval midgut6 ± 12 of 4 0.19Down
Larval tubule8 ± 11 of 4 0.30Down
Larval hindgut6 ± 11 of 4 0.20Down
Larval fat body4 ± 20 of 4 0.10Down
Larval trachea9 ± 122 of 4 0.28Down
Larval carcass11 ± 11 of 4 0.34Down
S2 cells (growing)12 ± 04 of 4 0.38Down
Whole fly32 ± 34 of 4

Looking for CG12071-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime