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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12072-RA through 18771 annotations produced 1 hits

warts (wts):

Annotation Number : CG12072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011739
Gbrowse : chr3R:26615378-26632341 (-) // 100.0 //
Probeset : 1635182_at
Accessions : protein= NP_733403;, nucleotide= NM_170524;
Pathway : open tracheal system // non-traceable author statement /// 0007446 // imaginal disc growth // inferred from mutant phen
Interpro : signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from genetic interaction ///
FlyMine data for FBgn0011739.
Homophila reports that CG12072 is a close match (1e-11) to human gene CDK4;CMM3 (NP_000066), a gene associated with Melanoma, 609048 (3).
BioGrid reports that CG12072 interacts with CG31045 CG5053 .
TRiP has 4 RNAi stocks for FBgn0011739 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011739 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain325 54 of 4 2.60Up
Head196 134 of 4 1.60Up
Eye296 174 of 4 2.39Up
Thoracicoabdominal ganglion342 164 of 4 2.80Up
Salivary gland188 94 of 4 1.52Up
Crop309 84 of 4 2.50Up
Midgut85 34 of 4 0.70Down
Tubule79 84 of 4 0.60Down
Hindgut142 64 of 4 1.20None
Heart210 114 of 4 1.70Up
Fat body203 344 of 4 1.64Up
Ovary191 14 of 4 1.50Up
Testis34 14 of 4 0.30Down
Male accessory glands213 84 of 4 1.70Up
Virgin spermatheca165 64 of 4 1.33Up
Mated spermatheca171 64 of 4 1.38Up
Adult carcass201 74 of 4 1.60Up
Larval CNS257 324 of 4 2.07Up
Larval Salivary gland178 84 of 4 1.44Up
Larval midgut147 104 of 4 1.19None
Larval tubule321 114 of 4 2.60Up
Larval hindgut169 84 of 4 1.36Up
Larval fat body104 44 of 4 0.80Down
Larval trachea224 264 of 4 1.81Up
Larval carcass227 94 of 4 1.84Up
S2 cells (growing)172 34 of 4 1.39Up
Whole fly124 44 of 4

Looking for CG12072-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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