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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1208-RA through 18771 annotations produced 1 hits



(CG1208):

Annotation Number : CG1208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037386
Gbrowse : chr3R:1657349-1664504 (+) // 100.0 //
Probeset : 1629070_at
Accessions : protein= NP_001097692; /// NP_649598;, nucleotide= NM_001104222; /// NM_141341;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter
FlyMine data for FBgn0037386.
BDGP gene expression has embryonic in situ data for CG1208: 4 pix of staining in 1 body parts.
Homophila reports that CG1208 is a close match (3e-23) to human gene GLUT9;SLC2A9;UAQTL2 (NP_001001290), a gene associated with {Uric acid concentration, serum, QTL 2}, 612076 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.30Down
Head77 ± 34 of 4 1.40None
Eye52 ± 64 of 4 0.92None
Thoracicoabdominal ganglion15 ± 14 of 4 0.30Down
Salivary gland35 ± 43 of 4 0.62Down
Crop397 ± 84 of 4 7.00Up
Midgut879 ± 314 of 415.40Up
Tubule2 ± 00 of 4 0.10Down
Hindgut29 ± 14 of 4 0.50Down
Heart134 ± 64 of 4 2.35Up
Fat body20 ± 24 of 4 0.36Down
Ovary2 ± 00 of 4 0.00Down
Testis10 ± 04 of 4 0.20Down
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca24 ± 14 of 4 0.42Down
Mated spermatheca25 ± 33 of 4 0.44Down
Adult carcass142 ± 134 of 4 2.50Up
Larval CNS2 ± 00 of 4 0.05Down
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut147 ± 204 of 4 2.58Up
Larval tubule8 ± 10 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.10Down
Larval fat body10 ± 12 of 4 0.20Down
Larval trachea3 ± 11 of 4 0.05Down
Larval carcass32 ± 24 of 4 0.57Down
S2 cells (growing)3 ± 10 of 4 0.06Down
Whole fly57 ± 74 of 4

Looking for CG1208-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime