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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12081-RA through 18771 annotations produced 1 hits



/// (CG12081 /// DsimCG12081):

Annotation Number : CG12081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030053
Gbrowse : chrX:8482856-8484743 (+) // 100.0 //
Probeset : 1626154_at
Accessions : protein= NP_572494;, nucleotide= NM_132266;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030053.
BDGP gene expression has embryonic in situ data for CG12081: 8 pix of staining in 1 body parts.
BioGrid reports that CG12081 interacts with CG1399 CG15220 CG6502 CG12323 CG15693 CG1937 CG2247 CG5807 CG8276 .
VDRC has 3 RNAi stocks for FBgn0030053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 14 of 4 1.10None
Head59 ± 34 of 4 0.80None
Eye79 ± 44 of 4 1.03None
Thoracicoabdominal ganglion72 ± 34 of 4 0.90None
Salivary gland271 ± 164 of 4 3.53Up
Crop58 ± 14 of 4 0.80None
Midgut48 ± 34 of 4 0.60Down
Tubule43 ± 24 of 4 0.60Down
Hindgut262 ± 124 of 4 3.40Up
Heart69 ± 54 of 4 0.90None
Fat body65 ± 34 of 4 0.85None
Ovary114 ± 34 of 4 1.50Up
Testis55 ± 24 of 4 0.70None
Male accessory glands203 ± 84 of 4 2.60Up
Virgin spermatheca66 ± 34 of 4 0.87None
Mated spermatheca50 ± 54 of 4 0.66Down
Adult carcass67 ± 54 of 4 0.90None
Larval CNS143 ± 64 of 4 1.87Up
Larval Salivary gland362 ± 224 of 4 4.71Up
Larval midgut62 ± 94 of 4 0.81None
Larval tubule86 ± 14 of 4 1.10None
Larval hindgut216 ± 214 of 4 2.81Up
Larval fat body70 ± 74 of 4 0.90None
Larval trachea258 ± 584 of 4 3.36Up
Larval carcass93 ± 84 of 4 1.22None
S2 cells (growing)108 ± 34 of 4 1.41Up
Whole fly77 ± 74 of 4

Looking for CG12081-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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