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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12102-RA through 18771 annotations produced 2 hits



(CG34104):

Annotation Number : S.CX001098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083940
Gbrowse : chrX:9982221-10005780 (+) // 99.3 //
Probeset : 1637474_at
Accessions : protein= NP_001036266; /// NP_001036267;, nucleotide= NM_001042801; /// NM_001042802;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0083940.
TRiP has 2 RNAi stocks for FBgn0083940 available for purchase.
VDRC has 5 RNAi stocks for FBgn0083940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.20None
Head7 ± 20 of 4 1.80None
Eye2 ± 00 of 4 0.56None
Thoracicoabdominal ganglion3 ± 00 of 4 0.70None
Salivary gland29 ± 40 of 4 7.41Up
Crop4 ± 10 of 4 1.20None
Midgut6 ± 10 of 4 1.70None
Tubule3 ± 00 of 4 0.80None
Hindgut5 ± 20 of 4 1.50None
Heart3 ± 10 of 4 0.98None
Fat body7 ± 40 of 4 1.78None
Ovary5 ± 10 of 4 1.30None
Testis2 ± 10 of 4 0.70None
Male accessory glands10 ± 40 of 4 2.60None
Virgin spermatheca4 ± 10 of 4 1.02None
Mated spermatheca4 ± 20 of 4 1.21None
Adult carcass2 ± 00 of 4 0.60None
Larval CNS6 ± 31 of 4 1.52None
Larval Salivary gland3 ± 10 of 4 0.86None
Larval midgut4 ± 10 of 4 1.03None
Larval tubule10 ± 11 of 4 2.60Up
Larval hindgut1 ± 00 of 4 0.49None
Larval fat body10 ± 20 of 4 2.50None
Larval trachea0 ± 00 of 4 0.15None
Larval carcass4 ± 10 of 4 1.03None
S2 cells (growing)5 ± 10 of 4 1.30None
Whole fly4 ± 10 of 4



(CG34104):

Annotation Number : CG12102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083940
Gbrowse : chrX:10040218-10041405 (+) // 100.0 //
Probeset : 1635113_at
Accessions : protein= NP_001036266; /// NP_001036267;, nucleotide= NM_001042801; /// NM_001042802;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0083940.
TRiP has 2 RNAi stocks for FBgn0083940 available for purchase.
VDRC has 5 RNAi stocks for FBgn0083940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 03 of 4 0.50Down
Head19 ± 24 of 4 0.90None
Eye24 ± 24 of 4 1.16None
Thoracicoabdominal ganglion14 ± 14 of 4 0.70None
Salivary gland6 ± 20 of 4 0.32Down
Crop28 ± 34 of 4 1.40None
Midgut17 ± 13 of 4 0.80None
Tubule29 ± 44 of 4 1.40None
Hindgut24 ± 04 of 4 1.10None
Heart3 ± 11 of 4 0.18Down
Fat body11 ± 21 of 4 0.53Down
Ovary24 ± 14 of 4 1.20None
Testis11 ± 33 of 4 0.60None
Male accessory glands12 ± 41 of 4 0.60None
Virgin spermatheca12 ± 11 of 4 0.59Down
Mated spermatheca13 ± 04 of 4 0.62Down
Adult carcass14 ± 41 of 4 0.70None
Larval CNS25 ± 34 of 4 1.21None
Larval Salivary gland24 ± 24 of 4 1.16None
Larval midgut14 ± 21 of 4 0.70None
Larval tubule192 ± 74 of 4 9.20Up
Larval hindgut15 ± 34 of 4 0.74None
Larval fat body51 ± 54 of 4 2.40Up
Larval trachea11 ± 33 of 4 0.54Down
Larval carcass16 ± 24 of 4 0.78None
S2 cells (growing)1 ± 00 of 4 0.09Down
Whole fly21 ± 24 of 4

Looking for CG12102-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime