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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1211-RA through 18771 annotations produced 1 hits



(CG33966):

Annotation Number : CG1211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053966
Gbrowse : chr3L:1232903-1235233 (+) // 100.0 //
Probeset : 1624172_at
Accessions : protein= NP_001033984;, nucleotide= NM_001038895;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from
FlyMine data for FBgn0053966.
VDRC has 1 RNAi stocks for FBgn0053966 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland10 ± 50 of 4 0.43None
Crop3 ± 10 of 4 0.10Down
Midgut278 ± 94 of 411.90Up
Tubule5 ± 20 of 4 0.20Down
Hindgut114 ± 114 of 4 4.90Up
Heart3 ± 00 of 4 0.14Down
Fat body9 ± 20 of 4 0.39None
Ovary2 ± 10 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands11 ± 30 of 4 0.50None
Virgin spermatheca4 ± 20 of 4 0.18Down
Mated spermatheca5 ± 10 of 4 0.24Down
Adult carcass4 ± 10 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.14Down
Larval Salivary gland2 ± 00 of 4 0.10Down
Larval midgut204 ± 114 of 4 8.77Up
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut47 ± 34 of 4 2.04Up
Larval fat body4 ± 10 of 4 0.20Down
Larval trachea1 ± 10 of 4 0.08Down
Larval carcass2 ± 00 of 4 0.09Down
S2 cells (growing)3 ± 00 of 4 0.13Down
Whole fly23 ± 54 of 4

Looking for CG1211-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime